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The map label for this gene is ygeA [C]

Identifier: 170683881

GI number: 170683881

Start: 1105889

End: 1106608

Strand: Reverse

Name: ygeA [C]

Synonym: EcSMS35_1090

Alternate gene names: 170683881

Gene position: 1106608-1105889 (Counterclockwise)

Preceding gene: 170680666

Following gene: 170683393

Centisome position: 21.83

GC content: 40.69

Gene sequence:

>720_bases
GTGAAAGGTTTAATCGGTGTGCTCGGTGGAATGGGGCCGGCCGCCACTGTCGACTTATTTAATAAATTTGTCACCTTTAC
AGCAGCACAACGAGATCAAGAACATATACCTTTAATTATTTCTTCTATCCCGGATATTCCTGACCGTACCGATGCATTAA
TGCATAACGGGCTCTCGCCTTTACCCGTTATGCGTGACTATATGCATAAACTGGAAGATGCAGGAGCAGAATGTATTGTT
ATTCCCTGTAATACCGCACACTATTGGTTTAAAGAACTAAAAGATGCTTGCCATATTGATATACTAAGTATCATAGATAC
TACGGTCGATGAAGTTCGCGTCTGTGGTAAAACTAGAATTGGCCTCCTGGCCACTGATGCCACGCTGTATATGGGATTAT
ACCAGAAAGGAATTGAATCGTTAGGGTTTAACTATATCACCCCGGATGCAGATGGCCAAAAAAATGTGATGAAAAGCATT
TATTCACTTAAAGCGGGAAATGTTACACATGCGCAAAAATTGATGGAAGAGCAGGCTGAAAATTTATTTTCCCGCGGAGC
AGAGATCTTGATTCTTGGTTGTACGGAAATTCCCATTATTCTGTCACAAGCCGTTAAAGATCAACCTTTACGCTATATTG
ATTCAACCGCTTCACTCGTTCGCGCAGGAATAAAATGGTATGAAAATCGTATCGGAAAAGATCAACATTTAACTCAATAA

Upstream 100 bases:

>100_bases
ATTGTACATCATTGCATTTCTCATAGCCTTTAGAGACTGTTAAAAAAGGAGAAATGGTTTTTTAAGTTTATGAGCATTGA
TTTTCTGAGAGGTAAGTATT

Downstream 100 bases:

>100_bases
TTCTAAATCACAGCCAGAAAGTTATTTTACAAAGATTATATTTACAACGGAGAACATCATGGTTTGGCTGGAAATTATCG
TTGTACTTGGCGCAATATTT

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMHNGLSPLPVMRDYMHKLEDAGAECIV
IPCNTAHYWFKELKDACHIDILSIIDTTVDEVRVCGKTRIGLLATDATLYMGLYQKGIESLGFNYITPDADGQKNVMKSI
YSLKAGNVTHAQKLMEEQAENLFSRGAEILILGCTEIPIILSQAVKDQPLRYIDSTASLVRAGIKWYENRIGKDQHLTQ

Sequences:

>Translated_239_residues
MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMHNGLSPLPVMRDYMHKLEDAGAECIV
IPCNTAHYWFKELKDACHIDILSIIDTTVDEVRVCGKTRIGLLATDATLYMGLYQKGIESLGFNYITPDADGQKNVMKSI
YSLKAGNVTHAQKLMEEQAENLFSRGAEILILGCTEIPIILSQAVKDQPLRYIDSTASLVRAGIKWYENRIGKDQHLTQ
>Mature_239_residues
MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMHNGLSPLPVMRDYMHKLEDAGAECIV
IPCNTAHYWFKELKDACHIDILSIIDTTVDEVRVCGKTRIGLLATDATLYMGLYQKGIESLGFNYITPDADGQKNVMKSI
YSLKAGNVTHAQKLMEEQAENLFSRGAEILILGCTEIPIILSQAVKDQPLRYIDSTASLVRAGIKWYENRIGKDQHLTQ

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=143, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: NA

Molecular weight: Translated: 26449; Mature: 26449

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMHNGLSP
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC
LPVMRDYMHKLEDAGAECIVIPCNTAHYWFKELKDACHIDILSIIDTTVDEVRVCGKTRI
CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLLATDATLYMGLYQKGIESLGFNYITPDADGQKNVMKSIYSLKAGNVTHAQKLMEEQAE
EEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NLFSRGAEILILGCTEIPIILSQAVKDQPLRYIDSTASLVRAGIKWYENRIGKDQHLTQ
HHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKGLIGVLGGMGPAATVDLFNKFVTFTAAQRDQEHIPLIISSIPDIPDRTDALMHNGLSP
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHCCCCC
LPVMRDYMHKLEDAGAECIVIPCNTAHYWFKELKDACHIDILSIIDTTVDEVRVCGKTRI
CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLLATDATLYMGLYQKGIESLGFNYITPDADGQKNVMKSIYSLKAGNVTHAQKLMEEQAE
EEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NLFSRGAEILILGCTEIPIILSQAVKDQPLRYIDSTASLVRAGIKWYENRIGKDQHLTQ
HHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1705542 [H]