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The map label for this gene is yqhC [H]

Identifier: 170683787

GI number: 170683787

Start: 3369356

End: 3370255

Strand: Reverse

Name: yqhC [H]

Synonym: EcSMS35_3294

Alternate gene names: 170683787

Gene position: 3370255-3369356 (Counterclockwise)

Preceding gene: 170683937

Following gene: 170680008

Centisome position: 66.5

GC content: 51.56

Gene sequence:

>900_bases
ATGAAACGTGAAGAGATTTGCCGCTTGCTGGCGGATAAAGTTAATAAACTGAAAAATAAAGAAAATAGTTTGTCAGAGCT
GTTGCCCGATGTGCGTTTGTTGTATGGCGAGACGCCTTTCGCACGCACACCGGTGATGTACGAGCCTGGCATCATAATTC
TCTTTTCCGGACATAAAATCGGTTATATCAATGAACGCGTGTTTCGTTATGATGCCAATGAATACCTGCTGCTGACGGTG
CCGTTGCCGTTTGAGTGCGAAACCTATGCCACGTCAGAGGTGCCGCTGGCAGGGTTGCGTCTCAATGTCGATATTTTGCA
GTTACAGGAACTGTTGATGGACATTGGCGAAGATGAGCATTTCCAGCCGTCGATGGCAGCCAGCGGGATTAACTCCGCCA
CGTTATCAGAAGAGATTTTATGCGCGGCGGAGCGGTTACTCGACGTGATGGAGCGACCGCTGGATGCGCGTATTCTCGGC
AAACAGATCATCCGCGAAATTCTGTACTACGTGCTGACCGGACCTTGCGGCGGCGCGTTACTGGCGCTGGTCAGTCGCCA
GACTCACTTCAGCCTTATTAGCCGCGTGCTGAAACGGATTGAGAATAAATACACCGAAAACCTGAGCGTCGAGCAACTGG
CGGCAGAAGCCAACATGAGCGTATCGGCGTTCCACCATAATTTTAAGTCTGTCACCAGCACCTCGCCGTTGCAGTATTTG
AAGAATTACCGTCTGCATAAGGCGCGGATGATGATCATCCACGACGGCATGAAAGCCAGTGCGGCAGCGATGCGCGTCGG
TTACGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGGGAAGATGCGGCAAGAATGC
GGGCGATGCAGGGGAATTAA

Upstream 100 bases:

>100_bases
ATTTCTGCCAATGTCTTGCCTATTTCTCCAGAGTGCTGGAGAAATGCTACAAAATTGCGCACAATCAAATTGCCGCATTA
TTCCTAAGAAATTACGCGAT

Downstream 100 bases:

>100_bases
ATACGTTCCCGGTACAGCAACCGGGAACGGGGAAAATCGTCAGGCGTTACAGTATTTTTTTTTAATCACCACAAACAGCG
TGCCCAACAAGCCAGCGGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTV
PLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Sequences:

>Translated_299_residues
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTV
PLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
>Mature_299_residues
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTV
PLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=299, Percent_Identity=99.6655518394649, Blast_Score=613, Evalue=1e-177,
Organism=Escherichia coli, GI1786496, Length=88, Percent_Identity=39.7727272727273, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33816; Mature: 33816

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEECCCEE
GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH
EEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCC
FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
HHCHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKI
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCEEEEECCCEE
GYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEH
EEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCC
FQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGAL
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
LALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
KNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN
HHCHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]