Click here to switch to the map view.

The map label for this gene is lfiR [H]

Identifier: 170683764

GI number: 170683764

Start: 258392

End: 259174

Strand: Reverse

Name: lfiR [H]

Synonym: EcSMS35_0243

Alternate gene names: 170683764

Gene position: 259174-258392 (Counterclockwise)

Preceding gene: 170683515

Following gene: 170683079

Centisome position: 5.11

GC content: 55.68

Gene sequence:

>783_bases
ATGCGCACAAGCGACGTTACGCAACTGACGGATTTGGCGCTGGGGCTGTGGTTTCCCTTCGTGCGCATTATGGCGTTTCT
GCGCTATGTGCCGGTGCTGGATAACAGCGCCCTGACCGTGCGTGTGCGGATTATTTTGTCGCTGGCGCTGGCAATCATCA
TCACGCCGTTAATTCCGCATCCCATTCCCCACGATCTGCTATCGCTCAACAGTCTGATCCTGACGGTGGAGCAAATTTTA
TGGGGCATGTTATTCGGATTGATGTTTCAGTTTCTGTTTCTGGCGCTGCAACTCGCCGGGCAAATTCTCTCGTTCAATAT
GGGGATGAGCATGGCGGTGATGAACGACCCAAGCAGCGGCGCATCGACCACCGTGCTGGCGGAGTTAATTAACGTCTATG
CGATCCTGCTGTTTTTTGCCATGGACGGGCATCTGCTGCTGGTAAGCGTGCTGTATAAGGGTTTCACCTACTGGCCGATT
GGCAACGCGCTGCATCCGCAAACCCTGCGCACCATCGCGCTGGCCTTTAGCTGGGTGCTGGCGTCCGCATCACTGCTGGC
GCTGCCGACCACTTTTATCATGCTGATTGTGCAGGGCTGCTTTGGCCTGCTTAACCGCATTGCGCCGCCGCTGAACCTTT
TTTCGCTCGGCTTTCCCATCAACATGCTGGCGGGGCTGGTTTGCTTCGCCACCCTGCTCTACAACCTGCCGGATCACTAT
CTGCATCTGGCGAATTTTGTGTTGCAGCAACTCGACGCGCTGAAAGGTCACTATGGCGGATAG

Upstream 100 bases:

>100_bases
ACGCTGGTGGTGCTGGGGGTGTGCGGCAAATGGATGATTATCCAGTTGCATGATCTCTGCATTCATCTGTTTAGTCAGGC
CGCCCTGCTGGTGCATTAAG

Downstream 100 bases:

>100_bases
CAGCAGCGAAGAAAAAACAGAGAAACCCTCGGCGCAAAAGCTGCGTAAAGCGCGTGAAGAGGGGCAACTGCCGCGCTCGA
AGGATATGGGGCTGGCGGCG

Product: lateral flagellar export/assembly protein LfiR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRTSDVTQLTDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLILTVEQIL
WGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPI
GNALHPQTLRTIALAFSWVLASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHY
LHLANFVLQQLDALKGHYGG

Sequences:

>Translated_260_residues
MRTSDVTQLTDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLILTVEQIL
WGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPI
GNALHPQTLRTIALAFSWVLASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHY
LHLANFVLQQLDALKGHYGG
>Mature_260_residues
MRTSDVTQLTDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPIPHDLLSLNSLILTVEQIL
WGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPI
GNALHPQTLRTIALAFSWVLASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHY
LHLANFVLQQLDALKGHYGG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=235, Percent_Identity=33.6170212765957, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28690; Mature: 28690

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSDVTQLTDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PIPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
ASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHH
ASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
LHLANFVLQQLDALKGHYGG
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRTSDVTQLTDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PIPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
ASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHH
ASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
LHLANFVLQQLDALKGHYGG
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]