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The map label for this gene is rhmR [H]

Identifier: 170683760

GI number: 170683760

Start: 2450809

End: 2451591

Strand: Reverse

Name: rhmR [H]

Synonym: EcSMS35_2402

Alternate gene names: 170683760

Gene position: 2451591-2450809 (Counterclockwise)

Preceding gene: 170680019

Following gene: 170683394

Centisome position: 48.37

GC content: 50.83

Gene sequence:

>783_bases
ATGTTGGAATCAAGCAAAGTTCCCGCCCTGACACGGGCTATTGATATTCTCAATTTGATTGCCCGCATTGGCCCCTGTAG
TGCTGCGACGATCATTGACACATTGGGGATCCCTAAAAGCACGGCCTATTTGCTGCTTAATGAACTCAGGCGTCAGCGTT
TTCTTAGCCTTGATCACCAGGAAAATTTTTGTTTGTGGACCAGGCTGGTGGAGCTTTCCGGTCATGCGTTAAGCAAGATG
GATCTCCGGGAACTGGCTCGACCGCGTTTGACGCAACTGATGGATACCACCGGGCTGTTATGTCACCTGGGGATTATTGA
TAACGGCAGCGCTTATTACATTTTGAAAGTGGAGTCATCAGCCACTATCAGCGTGCGTTCCCATGAAGGAAAAAGCCTTT
CGCTTTATCGCTCCGGAATAGGTAAATGCCTGCTTGCCTGGCAACCTGCAGCTGTACAGCAAAGTATTATCGAAGGGCTG
ATCTGGGAGCAGGCGACACCCACAACGATTACTCATCCACAGCAACTTCACGAAGAACTGGCGCGTATTCGCCGTCAGGG
CTGGAGCTATGACAACGGCGAAGATTACGCCGATGTCCGTTGTGTCGCTGCGCCGGTTTTTAACGCCAATAACGAGCTTA
CCGCTGCGATCTCGGTGGTCGGTACCCGCTTACAAATCAATGAAGAATACCGTGATTATCTGGCGGGCAAGGCCATTGCC
TGCGCCAGGGATATTTCACGTCTGTTGGGATGGAAAAGTCCCTTTGACTTACAGGCCTCATAA

Upstream 100 bases:

>100_bases
TCTCCAGTCCGCTGGACGAGGAGCGGGATTTGATGCGCTTCACAATTTTACTCCCCCTGAGCAACGAGACTGATTCCAGT
ATCTAAGACTGGAGTCCAGT

Downstream 100 bases:

>100_bases
CAATGGAGAACAGCATGACCCTACCAAAAATCAAACAGGTTCGCGCCTGGTTTACTGGCGGTGCGACAGCAGAAAAAGGC
GCTGGCGGTGGTGATTATCA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKM
DLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGL
IWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
CARDISRLLGWKSPFDLQAS

Sequences:

>Translated_260_residues
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKM
DLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGL
IWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
CARDISRLLGWKSPFDLQAS
>Mature_260_residues
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKM
DLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGL
IWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
CARDISRLLGWKSPFDLQAS

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=99.6153846153846, Blast_Score=533, Evalue=1e-153,
Organism=Escherichia coli, GI1790752, Length=246, Percent_Identity=31.7073170731707, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786468, Length=251, Percent_Identity=30.6772908366534, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788131, Length=222, Percent_Identity=32.8828828828829, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082359, Length=251, Percent_Identity=24.7011952191235, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786715, Length=248, Percent_Identity=28.2258064516129, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789999, Length=244, Percent_Identity=26.6393442622951, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28919; Mature: 28919

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
ENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEECCC
ATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLIWEQATPTTITHPQQLHEEL
CEEEEECCCCCCHHHHHHCHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
HHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHEEECHHHHHHHHCCHHH
CARDISRLLGWKSPFDLQAS
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
ENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEECCC
ATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLIWEQATPTTITHPQQLHEEL
CEEEEECCCCCCHHHHHHCHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
HHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHEEECHHHHHHHHCCHHH
CARDISRLLGWKSPFDLQAS
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]