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The map label for this gene is ybdM [H]

Identifier: 170683718

GI number: 170683718

Start: 635601

End: 636218

Strand: Reverse

Name: ybdM [H]

Synonym: EcSMS35_0622

Alternate gene names: 170683718

Gene position: 636218-635601 (Counterclockwise)

Preceding gene: 170680017

Following gene: 170684067

Centisome position: 12.55

GC content: 46.44

Gene sequence:

>618_bases
ATGCAACAACGATTAACGCAGGATTTAACCCAATTTCTCGCCAGCTTGCCGGAAGATGATCGCATCAAAGCGATTAATGA
AATCCGCATGGCGATCCATCAGGTTAGCCCCTTTCGTGAAGAGCCAGTGGATTGCGTTCTGTGGGTTAAAAACAGCCAAC
TTATGCCTAATGATTACAACCCAAACAACGTGGCACCACCCGAAAAAAAACTGCTGAAAAAATCCATTGAAATAGATGGT
TTTACCCAACCCATTGTGGTCACGCATACGGATAAAAATGCCCTGGAAATCGTGGATGGTTTTCACCGCCATGAAATTGG
TAAAGGCTCATCATCGTTAAAATTACGCTTAAAAGGTTATTTGCCGGTGACCTGTCTGGAAGGTACGCGTAATCAACGCA
TCGCCGCAACTATTCGTCATAATCGCGCTCGTGGACGTCACCAAATCACTGCCATGTCAGAAATCGTCCGAGAACTCAGC
CAGTTGGGATGGGACGATAATAAAATTGGCAAAGAGCTGGGAATGGACAGCGACGAAGTGTTGCGCCTGAAGCAAATTAA
CGGCCTGCAAGAGTTGTTTGCCGACCGTCAATTTTCCCGCGCCTGGACGGTTAAATAA

Upstream 100 bases:

>100_bases
ATTACTGGTGCCGGGCATTATCATTTAGTCCTACGAAAGCGAAGAACTATCAGCGTTATAACGAACGGATAAAAGGAAAA
CGTCAGGAATGGGGGATACT

Downstream 100 bases:

>100_bases
CTAAAGCTGGCGCAGGCGTTCTGCTGCTGCCAGCAACGTCGATTCCTTCTTGGCAAAACAGAGACGAATCAGTTTATGTG
GGAAGGGATCGGCGCAAAAC

Product: immunoglobulin-binding regulator family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDG
FTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQFSRAWTVK

Sequences:

>Translated_205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDG
FTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQFSRAWTVK
>Mature_205_residues
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDG
FTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELS
QLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQFSRAWTVK

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=205, Percent_Identity=98.5365853658537, Blast_Score=423, Evalue=1e-120,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 23505; Mature: 23505

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLKKSIEIDGFTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGY
CCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV
CEEEEECCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
LRLKQINGLQELFADRQFSRAWTVK
HHHHHHCCHHHHHHCHHHCCCCCCC
>Mature Secondary Structure
MQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCVLWVKNSQLMPNDYN
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC
PNNVAPPEKKLLKKSIEIDGFTQPIVVTHTDKNALEIVDGFHRHEIGKGSSSLKLRLKGY
CCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
LPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIVRELSQLGWDDNKIGKELGMDSDEV
CEEEEECCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
LRLKQINGLQELFADRQFSRAWTVK
HHHHHHCCHHHHHHCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]