Click here to switch to the map view.

The map label for this gene is ybiU [H]

Identifier: 170683552

GI number: 170683552

Start: 849475

End: 850740

Strand: Reverse

Name: ybiU [H]

Synonym: EcSMS35_0846

Alternate gene names: 170683552

Gene position: 850740-849475 (Counterclockwise)

Preceding gene: 170682885

Following gene: 170683699

Centisome position: 16.79

GC content: 55.53

Gene sequence:

>1266_bases
ATGGCTTCTACTTTTACCAGCGACACATTGCCTGCCGATCACAAAGCAGCTATCCGTCAGATGAAGCACGCGCTGCGGGC
GCAGCTTGGCGACGTCCAGCAGATCTTTAATCAGCTAAGCGATGACATTGCCACGCGAGTGGCTGAAATCAACGCACTCA
AAGCACAGGGCGATGCAGTCTGGCCGGTGCTGTCTTATGCCGATATCAAAGCAGGTCATGTTACTGCAGAGCAACGCGAA
CAGATTAAACGTCGCGGTTGTGCGGTGATAAAAGGCCATTTCCCCCGCGAACAAGCGCTAGGCTGGGATCAGTCGATGCT
GGACTATCTGGACCGCAACCGCTTTGATGAGGTCTACAAAGGCCCCGGCGATAATTTCTTCGGGACGCTCAGCGCTTCAC
GTCCCGAGATTTACCCCATCTACTGGTCGCAGGCGCAAATGCAGGCCCGCCAGAGTGAAGAAATGGCGAATGCGCAGTCG
TTTCTCAATCGTCTGTGGACATTTGAAAGTGATGGAAAGCAATGGTTTAACCCGGATGTGAGCGTCATCTACCCTGACCG
TATCCGCCGCCGTCCGCCCGGAACGGCCTCCAAAGGTCTCGGAGCGCATACCGACTCCGGGGCACTGGAACGCTGGCTGC
TTCCAGCGTATCAGCGCGTTTTCGCCAACGTCTTTAATGGCAATCTGGCGCAATATGATCCCTGGCATGCGGCACATCGT
ACAGAAGTTGAAGAGTACACGGTGGACAACACCACCAAATGTTCCGTGTTTCGGACATTCCAGGGCTGGACAGCGCTCTC
TGATATGCTGCCTGGTCAGGGACTGCTGCACGTCGTGCCCATTCCTGAAGCCATAGCGTACGTGCTGTTACGTCCGCTGC
TTGATGATGTGCCGGAGGATGAACTGTGCGGCGTAGCGCCCGGAAGAGTGTTGCCGGTATCAGAGCAATGGCATCCACTG
TTGATTGAGGCATTAACCAGCATTCCACAACTCGAAGCCGGAGACTCCGTCTGGTGGCACTGCGACGTCATCCATTCCGT
TGCCCCCGTTGAAAATCAACAGGGCTGGGGCAACGTGATGTACATTCCTGCGGCACCGATGTGCGAGAAAAATCTTGCCT
ACGCGCACAAGGTGAAGGCCGCACTGGAAAAAGGCGCATCACCTGGCGACTTCCCGCGGGAAGATTATGAAGCAAACTGG
GAAGGCCGCTTTACGCTGGAGGATCTGAACATTCACGGTAAGCGCGCACTGGGCATGGATGTTTGA

Upstream 100 bases:

>100_bases
ACATCACATCAAATCATTAAACTTGCATTAACTTATTTATAACTTATATTGTCACATGCAAATCAGTATAGTTTCGAATG
AAAGTTAATGCGAGGTGGTT

Downstream 100 bases:

>100_bases
GAGTTAATGGAAGTGAATTGATGTGGGATTAAGAAAATCGATTCGACGTTACTCAGATTGCTGACAAATGCGCTTTGTTA
ATGCCTGATGCGGCGTTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQRE
QIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQS
FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTASKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR
TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAIAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPL
LIEALTSIPQLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYEANW
EGRFTLEDLNIHGKRALGMDV

Sequences:

>Translated_421_residues
MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQRE
QIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQS
FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTASKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR
TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAIAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPL
LIEALTSIPQLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYEANW
EGRFTLEDLNIHGKRALGMDV
>Mature_420_residues
ASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQ
IKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSF
LNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTASKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHRT
EVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAIAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLL
IEALTSIPQLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYEANWE
GRFTLEDLNIHGKRALGMDV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787042, Length=421, Percent_Identity=98.812351543943, Blast_Score=870, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010856 [H]

Pfam domain/function: PF07350 DUF1479 [H]

EC number: NA

Molecular weight: Translated: 47310; Mature: 47179

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
WPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYK
CHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHC
GPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDV
CCCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
SVIYPDRIRRRPPGTASKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR
EEECCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAIAYVLLRPLLDDVPED
CCHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC
ELCGVAPGRVLPVSEQWHPLLIEALTSIPQLEAGDSVWWHCDVIHSVAPVENQQGWGNVM
HHCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCEE
YIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYEANWEGRFTLEDLNIHGKRALGMD
EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
V
C
>Mature Secondary Structure 
ASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
WPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGWDQSMLDYLDRNRFDEVYK
CHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHC
GPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQSFLNRLWTFESDGKQWFNPDV
CCCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCC
SVIYPDRIRRRPPGTASKGLGAHTDSGALERWLLPAYQRVFANVFNGNLAQYDPWHAAHR
EEECCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
TEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAIAYVLLRPLLDDVPED
CCHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCC
ELCGVAPGRVLPVSEQWHPLLIEALTSIPQLEAGDSVWWHCDVIHSVAPVENQQGWGNVM
HHCCCCCCCEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCEE
YIPAAPMCEKNLAYAHKVKAALEKGASPGDFPREDYEANWEGRFTLEDLNIHGKRALGMD
EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]