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The map label for this gene is rhaB [H]

Identifier: 170683095

GI number: 170683095

Start: 4398407

End: 4399876

Strand: Reverse

Name: rhaB [H]

Synonym: EcSMS35_4295

Alternate gene names: 170683095

Gene position: 4399876-4398407 (Counterclockwise)

Preceding gene: 170683644

Following gene: 170680183

Centisome position: 86.81

GC content: 55.1

Gene sequence:

>1470_bases
ATGACCTTTCGCAATTGTGTCGCCGTCGATCTCGGCGCATCCAGTGGGCGCGTGATGCTGGCGCGTTACGAGCGTGAATG
CCGCAGCCTGACGCTGCGCGAAATCTATCGTTTTAACAATGGCCTGCATAGCCAGAACGGTTATGTCACCTGGGATGTGG
ATAGCCTGGAAAGTGCCATTCGCCTTGGATTAAACAAGGTGTGCGAGGAAGGGATTCGTATCGATAGCATTGGGATTGAT
ACCTGGGGCGTGGACTTTGTGCTGCTCGACCTACAGGGTAAGCGTGTGGGTCTGCCCGTTGCTTATCGCGATAGCCGCAC
CAATGGCCTGATGACGCAGGCACAACAGCAACTCGGCAAACGCGATATTTATCAGCGTAGCGGCATCCAGTTTCTGCCCT
TCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAGCTTATTCCACACATTGCTCACGCTCTGCTGATG
CCGGATTACTTCAGTTATCGCCTGACCGGCAAGATGAACTGGGAGTACACCAACGCCACGACCACGCAACTGGTCAATAT
TAATAGCGACGACTGGGACGAGTCGCTACTGGCGTGGAGCGGGGCCAACAAAGCCTGGTTTGGTCGCCCGACGCATCCGG
GTAATGTCATTGGGCACTGGATTTGCCCGCAGGGTAATGAGATTCCGGTGGTCGCCGTTGCCAGCCATGATACCGCCAGC
GCGGTTATCGCCTCGCCGTTAAACGGTTCACGCGCCGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAG
CCAGACACCATTTACCAATGACACGGCGCTGGCAGCCAACATCACCAATGAAGGCGGGGCGGAAGGTCGCTATCGGGTGC
TGAAAAATATTATGGGCTTATGGCTGCTTCAGCGGGTGCTTCAGGAGCGGCAAATCAACGATCTTCCGGCGCTTATCGCC
GCGACACAGGCACTGCCGGCTTGCCGCTTCACCATCAATCCCAATGACGATCGCTTTATTAATCCTGACGAGATGTGCAG
CGAAATTCAGGCTGCGTGTCGGGAAACGGCGCAACCAATCCCGGAAAGTGATGCTGAACTGGCGCGCTGTATTGTCGACA
GTCTGGCGCTGCTGTATGCCGATGTGTTGCATGAGCTGGCGCAACTGCGCGGTGAAGATTTCTCACAACTGCATATTGTC
GGCGGTGGCTGCCAGAACGCGCTGCTCAACCAGTTATGTGCTGATGCCTGCGGTATTCGGGTGATCGCCGGGCCTGTTGA
AGCCTCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCG
TCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGCCCACTATGTGGCGCAGATTCACTCT
ACACGACAGACAAAGGAGCTTTGTGCATGA

Upstream 100 bases:

>100_bases
TCCCTGGTTGCCAATGGCCCATTTTCCTGTCAGTAACGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACTGGTCGTAATG
AAATTCAGCAGGATCACATT

Downstream 100 bases:

>100_bases
CCACTCAACTGGAACAGGCCTGGGAACTGGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGGCGCTGCGC
CAACTTGATCGTTTACCCGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIYRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDLQGKRVGLPVAYRDSRTNGLMTQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIVDSLALLYADVLHELAQLRGEDFSQLHIV
GGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
TRQTKELCA

Sequences:

>Translated_489_residues
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIYRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGID
TWGVDFVLLDLQGKRVGLPVAYRDSRTNGLMTQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIA
ATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIVDSLALLYADVLHELAQLRGEDFSQLHIV
GGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
TRQTKELCA
>Mature_488_residues
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIYRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDT
WGVDFVLLDLQGKRVGLPVAYRDSRTNGLMTQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMP
DYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASA
VIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAA
TQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIVDSLALLYADVLHELAQLRGEDFSQLHIVG
GGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHST
RQTKELCA

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=489, Percent_Identity=97.7505112474438, Blast_Score=994, Evalue=0.0,
Organism=Escherichia coli, GI1789168, Length=412, Percent_Identity=25, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54047; Mature: 53915

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIYRFNNGLHSQNGYVTWDVDSLESAI
CCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDLQGKRVGLPVAYRDSRTNGLMTQAQQQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCEECCEEEECCCCCCHHHHHHHHHHHH
RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
PESDAELARCIVDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
TRQTKELCA
HHHHHHHCC
>Mature Secondary Structure 
TFRNCVAVDLGASSGRVMLARYERECRSLTLREIYRFNNGLHSQNGYVTWDVDSLESAI
CCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDLQGKRVGLPVAYRDSRTNGLMTQAQQQLGK
HHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCEECCEEEECCCCCCHHHHHHHHHHHH
RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
HHHHHHCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC
TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
EEEEEECCCCCCCCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCC
AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
HHEECCCCCCCEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
WLLQRVLQERQINDLPALIAATQALPACRFTINPNDDRFINPDEMCSEIQAACRETAQPI
HHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
PESDAELARCIVDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
EEECCCCCCHHCCCCEEEEEHHHCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
TRQTKELCA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA