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The map label for this gene is rfbA [H]

Identifier: 170682573

GI number: 170682573

Start: 2290183

End: 2290962

Strand: Reverse

Name: rfbA [H]

Synonym: EcSMS35_2268

Alternate gene names: 170682573

Gene position: 2290962-2290183 (Counterclockwise)

Preceding gene: 170682560

Following gene: 170680867

Centisome position: 45.2

GC content: 36.67

Gene sequence:

>780_bases
ATGAGTATAAAAATGAAGTATAATATAGGGTATTTGTTTGATCTTCTTGTTGTTATAACAAACAAAGATTTAAAGGTACG
TTATAAAAGCAGCGTATTTGGTTACTTATGGTCAATTGCGAATCCACTGCTTTTTGCAATGATATATTATTTCATTTTTA
AGCTCGTTATGCGAGTGCAGATCCCGAATTATACCCTTTTCTTGATTACCGGTTTATTTCCGTGGCAATGGTTTGCCAGC
TCGGCGACAAATTCCTTGTTTTCGTTTATAGCCAATGCGCAAATAATCAAAAAAACAGTTTTTCCGCGCTCAGTTATTCC
ATTGAGTAATGTCATGATGGAAGGGGTACATTTCTTGTGTACAATTCCTGTGATTATTGCATTCCTGTTCGTGTATGGTA
TGCGTCCATCGCTCTCATGGCTCTGGGGCGTACCAATTATTGCGCTTGGTCAGGTGATTTTTACATTTGGTATTTCAATC
ATATTTTCTACGCTAAATCTGTTCTTCAGGGATTTAGAGCGATTTGTCAGCCTTGGTATCATGCTCATGTTTTATTGCAC
GCCGATATTATATGCGTCAGATATGATTCCTGAAAAATTTAGCTGGATTATTACCTATAATCCTCTGGCAAGCATGATCC
TCAGCTGGCGGCAGCTGTTCATGGATGGCGTCTTAAATTATGAATATATTTCAATCCTTTACATTACAGGTTTAGTCCTG
ACAATTGTGGGCCTGAGTATTTTTAATAAATTAAAATATCGATTTGCAGAGATTTTGTAA

Upstream 100 bases:

>100_bases
TTTGTTTATGGGAATAGCTGTTCGTCTCTCGAGCACAGCAGATCTTATCGATAATTCTGTTTGATACATATTACGTACGG
AATTTTTTGTAGAATAATTT

Downstream 100 bases:

>100_bases
TGGAACCAGTAATAAACTTTAGTCACGTTACGAAAGAGTATCCTCTTTACCACCATATTGGCTCAGGAATTAAGGATCTC
GTATTTCACCCTAAAAGAGC

Product: O-antigen export system permease RfbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSIKMKYNIGYLFDLLVVITNKDLKVRYKSSVFGYLWSIANPLLFAMIYYFIFKLVMRVQIPNYTLFLITGLFPWQWFAS
SATNSLFSFIANAQIIKKTVFPRSVIPLSNVMMEGVHFLCTIPVIIAFLFVYGMRPSLSWLWGVPIIALGQVIFTFGISI
IFSTLNLFFRDLERFVSLGIMLMFYCTPILYASDMIPEKFSWIITYNPLASMILSWRQLFMDGVLNYEYISILYITGLVL
TIVGLSIFNKLKYRFAEIL

Sequences:

>Translated_259_residues
MSIKMKYNIGYLFDLLVVITNKDLKVRYKSSVFGYLWSIANPLLFAMIYYFIFKLVMRVQIPNYTLFLITGLFPWQWFAS
SATNSLFSFIANAQIIKKTVFPRSVIPLSNVMMEGVHFLCTIPVIIAFLFVYGMRPSLSWLWGVPIIALGQVIFTFGISI
IFSTLNLFFRDLERFVSLGIMLMFYCTPILYASDMIPEKFSWIITYNPLASMILSWRQLFMDGVLNYEYISILYITGLVL
TIVGLSIFNKLKYRFAEIL
>Mature_258_residues
SIKMKYNIGYLFDLLVVITNKDLKVRYKSSVFGYLWSIANPLLFAMIYYFIFKLVMRVQIPNYTLFLITGLFPWQWFASS
ATNSLFSFIANAQIIKKTVFPRSVIPLSNVMMEGVHFLCTIPVIIAFLFVYGMRPSLSWLWGVPIIALGQVIFTFGISII
FSTLNLFFRDLERFVSLGIMLMFYCTPILYASDMIPEKFSWIITYNPLASMILSWRQLFMDGVLNYEYISILYITGLVLT
IVGLSIFNKLKYRFAEIL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30086; Mature: 29955

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKMKYNIGYLFDLLVVITNKDLKVRYKSSVFGYLWSIANPLLFAMIYYFIFKLVMRVQ
CCEEEEECHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPNYTLFLITGLFPWQWFASSATNSLFSFIANAQIIKKTVFPRSVIPLSNVMMEGVHFLC
CCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHH
TIPVIIAFLFVYGMRPSLSWLWGVPIIALGQVIFTFGISIIFSTLNLFFRDLERFVSLGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLMFYCTPILYASDMIPEKFSWIITYNPLASMILSWRQLFMDGVLNYEYISILYITGLVL
HHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TIVGLSIFNKLKYRFAEIL
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIKMKYNIGYLFDLLVVITNKDLKVRYKSSVFGYLWSIANPLLFAMIYYFIFKLVMRVQ
CEEEEECHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPNYTLFLITGLFPWQWFASSATNSLFSFIANAQIIKKTVFPRSVIPLSNVMMEGVHFLC
CCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHH
TIPVIIAFLFVYGMRPSLSWLWGVPIIALGQVIFTFGISIIFSTLNLFFRDLERFVSLGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLMFYCTPILYASDMIPEKFSWIITYNPLASMILSWRQLFMDGVLNYEYISILYITGLVL
HHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
TIVGLSIFNKLKYRFAEIL
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]