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The map label for this gene is yedS [H]

Identifier: 170682358

GI number: 170682358

Start: 1224155

End: 1225318

Strand: Reverse

Name: yedS [H]

Synonym: EcSMS35_1221

Alternate gene names: 170682358

Gene position: 1225318-1224155 (Counterclockwise)

Preceding gene: 170681707

Following gene: 170682226

Centisome position: 24.18

GC content: 42.96

Gene sequence:

>1164_bases
ATGAAAAGAAAAGTTCTGGCAATGCTGGTCCCGGCGTTATTAGTTGCTGGCGCAGCAAATGCGGCTGAAATTTATAATAA
AAATGGCAATAAACTGGATCTGTACGGAAAAGTTGATGCTCGTCATACTTTTTCCGATAACCCTGGCGATGACGGCGATG
AAACTATCATCGAGTTAGGCTTCAAAGGTGAGACCCAAATTACAGATCAGTTAACTGGTTATGGTCAAGCACTGACCAAA
ACAAAGGCTAGCGACACTGAAGGTTCTGATAATACTTATGTCAAACTTGCTTTTGCAGGTCTGAAGTTCGGCGAGATGGG
CTCCTTTGACTATGGTCGTAACTATGGTGTGATTTACGACGTTGAAGCCTGGACAGATATGCTTCCTGTATTCGGCGGCG
ACTCCTATACCTGGACTGATAACTTCATGGCAGGCCGTGCAAATGGGGTAGCTACTTACCGCAATAGTGATTTCTTCGGT
CTGGTGGAAGGTCTGAACTTTGCATTGCAGTATCAAGGTAACAACGAAGGCAGCAATGCAGGAGAAGATCAAGAAGGTAC
TAAAAATGGTCACGAAGACGTTCGCTTCCAGAACGGTGATGGTTTTGGTCTTTCCACTTCATATGACTTTGACTTCGGTT
TGAGCTTAGGTGCCGCTTACTCAAACTCTGACCGTACCAATTCTCAAGTAGCTCTTGGCGGGTATCACTACAATGAATAC
AGCAAATTTGCTGGTGGTGATACAGCTGAAGCATGGACATTTGGTGCAAAATACGACGCCAACAATGTTTATCTTGCAAT
GATGTATGCTGAAACCCGCAATATGACACCATATGGTAATGTGGGTATCGCAAATAAAACCCAGAACTTTGAAGCTGTAG
CACAGTATCAGTTCGATTTTGGTCTGCGCCCATCTCTTGCATATGTTTATTCAAAAGGCAAAGACCTCGGCGGTAACGAC
TATAACAACAATGGTCATCAAGAGTATGTTGATCAGGATCTGGTCAACTATGTTGAAATTGGAGCGACCTACTATTTCAA
TAAGAACTTCTCAACATATGTTGACTATAAAATAAACTTGTTGGATAAAGATGACGATTTCTATGACAACAATGGCATCG
CAACAGATGACGTTGTTGGTGTGGGCTTAGTCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
TAAAATGAACTTCATAGAATAGTATCCAAATGTGCTTTTTTTTTGGATAACGGCACTTATTGATATATTCATGAAGATTA
TAATCACAAGGGAATACATA

Downstream 100 bases:

>100_bases
TCAGCCAACGCGCCGCGGCGTGTTACTGTAAAACTTAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTA
TTGGCATTTTATCTCCCTCT

Product: porin family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKLDLYGKVDARHTFSDNPGDDGDETIIELGFKGETQITDQLTGYGQALTK
TKASDTEGSDNTYVKLAFAGLKFGEMGSFDYGRNYGVIYDVEAWTDMLPVFGGDSYTWTDNFMAGRANGVATYRNSDFFG
LVEGLNFALQYQGNNEGSNAGEDQEGTKNGHEDVRFQNGDGFGLSTSYDFDFGLSLGAAYSNSDRTNSQVALGGYHYNEY
SKFAGGDTAEAWTFGAKYDANNVYLAMMYAETRNMTPYGNVGIANKTQNFEAVAQYQFDFGLRPSLAYVYSKGKDLGGND
YNNNGHQEYVDQDLVNYVEIGATYYFNKNFSTYVDYKINLLDKDDDFYDNNGIATDDVVGVGLVYQF

Sequences:

>Translated_387_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKLDLYGKVDARHTFSDNPGDDGDETIIELGFKGETQITDQLTGYGQALTK
TKASDTEGSDNTYVKLAFAGLKFGEMGSFDYGRNYGVIYDVEAWTDMLPVFGGDSYTWTDNFMAGRANGVATYRNSDFFG
LVEGLNFALQYQGNNEGSNAGEDQEGTKNGHEDVRFQNGDGFGLSTSYDFDFGLSLGAAYSNSDRTNSQVALGGYHYNEY
SKFAGGDTAEAWTFGAKYDANNVYLAMMYAETRNMTPYGNVGIANKTQNFEAVAQYQFDFGLRPSLAYVYSKGKDLGGND
YNNNGHQEYVDQDLVNYVEIGATYYFNKNFSTYVDYKINLLDKDDDFYDNNGIATDDVVGVGLVYQF
>Mature_387_residues
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKLDLYGKVDARHTFSDNPGDDGDETIIELGFKGETQITDQLTGYGQALTK
TKASDTEGSDNTYVKLAFAGLKFGEMGSFDYGRNYGVIYDVEAWTDMLPVFGGDSYTWTDNFMAGRANGVATYRNSDFFG
LVEGLNFALQYQGNNEGSNAGEDQEGTKNGHEDVRFQNGDGFGLSTSYDFDFGLSLGAAYSNSDRTNSQVALGGYHYNEY
SKFAGGDTAEAWTFGAKYDANNVYLAMMYAETRNMTPYGNVGIANKTQNFEAVAQYQFDFGLRPSLAYVYSKGKDLGGND
YNNNGHQEYVDQDLVNYVEIGATYYFNKNFSTYVDYKINLLDKDDDFYDNNGIATDDVVGVGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=393, Percent_Identity=67.4300254452926, Blast_Score=466, Evalue=1e-132,
Organism=Escherichia coli, GI1788544, Length=388, Percent_Identity=60.5670103092783, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1786436, Length=391, Percent_Identity=56.2659846547315, Blast_Score=400, Evalue=1e-112,
Organism=Escherichia coli, GI1787160, Length=400, Percent_Identity=53.25, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42658; Mature: 42658

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKLDLYGKVDARHTFSDNPGDDGDETIIELG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC
FKGETQITDQLTGYGQALTKTKASDTEGSDNTYVKLAFAGLKFGEMGSFDYGRNYGVIYD
CCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEE
VEAWTDMLPVFGGDSYTWTDNFMAGRANGVATYRNSDFFGLVEGLNFALQYQGNNEGSNA
CHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCC
GEDQEGTKNGHEDVRFQNGDGFGLSTSYDFDFGLSLGAAYSNSDRTNSQVALGGYHYNEY
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCEEECCH
SKFAGGDTAEAWTFGAKYDANNVYLAMMYAETRNMTPYGNVGIANKTQNFEAVAQYQFDF
HHHCCCCCCHHEEECCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECC
GLRPSLAYVYSKGKDLGGNDYNNNGHQEYVDQDLVNYVEIGATYYFNKNFSTYVDYKINL
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEE
LDKDDDFYDNNGIATDDVVGVGLVYQF
EECCCCCCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MKRKVLAMLVPALLVAGAANAAEIYNKNGNKLDLYGKVDARHTFSDNPGDDGDETIIELG
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEC
FKGETQITDQLTGYGQALTKTKASDTEGSDNTYVKLAFAGLKFGEMGSFDYGRNYGVIYD
CCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEE
VEAWTDMLPVFGGDSYTWTDNFMAGRANGVATYRNSDFFGLVEGLNFALQYQGNNEGSNA
CHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEECCCCEEEECCCCEEEEECCCCCCCCC
GEDQEGTKNGHEDVRFQNGDGFGLSTSYDFDFGLSLGAAYSNSDRTNSQVALGGYHYNEY
CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCEEECCH
SKFAGGDTAEAWTFGAKYDANNVYLAMMYAETRNMTPYGNVGIANKTQNFEAVAQYQFDF
HHHCCCCCCHHEEECCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECC
GLRPSLAYVYSKGKDLGGNDYNNNGHQEYVDQDLVNYVEIGATYYFNKNFSTYVDYKINL
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCEEEEEEEEE
LDKDDDFYDNNGIATDDVVGVGLVYQF
EECCCCCCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]