Click here to switch to the map view.

The map label for this gene is ygfB [H]

Identifier: 170681497

GI number: 170681497

Start: 3132644

End: 3133228

Strand: Reverse

Name: ygfB [H]

Synonym: EcSMS35_3043

Alternate gene names: 170681497

Gene position: 3133228-3132644 (Counterclockwise)

Preceding gene: 170683573

Following gene: 170680916

Centisome position: 61.82

GC content: 52.31

Gene sequence:

>585_bases
ATGCTTATGTCTATACAGAACGAAATGCCTGGTTACAACGAAATGAACCAGTATCTGAACCAACAAGGGACGGGTCTGAC
CCCAGCTGAGATGCATGGTTTAATCAGCGGGATGATATGTGGCGGTAACGATGACAGCTCATGGCTGCCGCTACTTCACG
ACCTGACGAACGAAGGCATGGCTTTCGGTCATGAGCTGGCACAGGCACTGCGTAAAATGCACTCTGCCACCAGCGATGCC
CTGCAGGATGACGGCTTCCTTTTTCAGCTTTATCTGCCTGATGGCGATGATGTCAGCGTTTTCGATCGGGCTGATGCGCT
GGCAGGTTGGGTTAATCACTTCCTGCTTGGTCTTGGCGTTACGCAACCGAAGCTGGACAAAGTGACCGGAGAAACCGGTG
AAGCCATCGACGATCTGCGTAACATCGCGCAGTTGGGCTACGACGAAGACGAAGATCAGGAAGAGCTTGAAATGTCGCTT
GAAGAGATCATCGAGTACGTCCGTGTTGCCGCGCTGTTATGCCACGACACCTTTACTCATCCGCAACCGACCGCGCCAGA
AGTACAAAAACCGACTCTACACTAA

Upstream 100 bases:

>100_bases
CGACACTATAGCTACCCTGATGAGAAGAGACAAGCCCTTTTCTGGTCCACCAGGGCCCAAAGTGGTAGCATATCATGAAT
ATTCCTCCCTTTGACGACGA

Downstream 100 bases:

>100_bases
AAACAAAAAACGTAAGGAGAGTGTTATGAGTGATATATCCCGGCAAGAGTTTCAGCGTCGCCGTCAGGCCCTGGTGGAGC
AAATGCAACCCGGCAGCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MLMSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGMAFGHELAQALRKMHSATSDA
LQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSL
EEIIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH

Sequences:

>Translated_194_residues
MLMSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGMAFGHELAQALRKMHSATSDA
LQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSL
EEIIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH
>Mature_194_residues
MLMSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGMAFGHELAQALRKMHSATSDA
LQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSL
EEIIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH

Specific function: Unknown

COG id: COG3079

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0149 family [H]

Homologues:

Organism=Escherichia coli, GI87082182, Length=192, Percent_Identity=100, Blast_Score=396, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011978 [H]

Pfam domain/function: PF03695 UPF0149 [H]

EC number: NA

Molecular weight: Translated: 21474; Mature: 21474

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGM
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCHH
AFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
TQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTH
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PQPTAPEVQKPTLH
CCCCCCCCCCCCCC
>Mature Secondary Structure
MLMSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDSSWLPLLHDLTNEGM
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCHH
AFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
TQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTH
CCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PQPTAPEVQKPTLH
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]