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The map label for this gene is ybdF [H]

Identifier: 170680636

GI number: 170680636

Start: 607974

End: 608357

Strand: Reverse

Name: ybdF [H]

Synonym: EcSMS35_0597

Alternate gene names: 170680636

Gene position: 608357-607974 (Counterclockwise)

Preceding gene: 170679894

Following gene: 170680898

Centisome position: 12.0

GC content: 47.66

Gene sequence:

>384_bases
ATGGATAAGCAATCACTGCACGAAACGGCGAAACGCCTGGCTCTTGAGTTACCCTTTGTCGAGCTTTGCTGGCCTTTTGG
CCCGGAGTTCGATGTTTTTAAAATTGGCGGCAAGATTTTTATGCTGTCGTCGGAGCTGCGCGGCGTCCCCTTTATCAATC
TGAAGTCCGATCCACAAAAATCCCTGCTAAATCAGCAAATATACCCAAGCATCAAGCCAGGGTATCACATGAATAAAAAG
CACTGGATTTCGGTGTATCCCGGCGAGGAAATCTCCGAAGCGTTACTTCGCGATCTGATCAACGATTCGTGGAATCTGGT
GGTTGATGGTCTGGCTAAACGCGATCAAAAAAGAGTGCGTCCTGACTCAACCGTAAATCAATAG

Upstream 100 bases:

>100_bases
TTTATCTGGCGACGCTGGTTCTCGCTGGCGGATTAAACGTCGATTATCGCCGAACTTCGCGGCATACTTTGCTTATTCTC
CTTCGCCTAAAGGAACGTTT

Downstream 100 bases:

>100_bases
CGCATTTTTCTCGCTTACCATTTCATCTCGATCCTTGTAATCTGCTGGCACGCAAAATTACTTTCACATGGAGTCTTTAT
GGATATCATTTCTGTCGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPDSTVNQ

Sequences:

>Translated_127_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPDSTVNQ
>Mature_127_residues
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKK
HWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPDSTVNQ

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=121, Percent_Identity=100, Blast_Score=251, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14638; Mature: 14638

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCC
PDSTVNQ
CCCCCCC
>Mature Secondary Structure
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK
CCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCEEECCCCHHH
SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVR
HHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCC
PDSTVNQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]