Click here to switch to the map view.

The map label for this gene is yggR [H]

Identifier: 170680393

GI number: 170680393

Start: 3180993

End: 3182018

Strand: Reverse

Name: yggR [H]

Synonym: EcSMS35_3092

Alternate gene names: 170680393

Gene position: 3182018-3180993 (Counterclockwise)

Preceding gene: 170681863

Following gene: 170680030

Centisome position: 62.78

GC content: 54.97

Gene sequence:

>1026_bases
GTGCCAGGTTATGCGCAATATCGTTCATTTTCCGAGGATCTTAGTATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAA
GCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACGATGGCGCATTCGCGGCAGAATGGAAGCTGCGCCGT
TTGACGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATGACGATCAGCGGGCAATATTGCTGGAGAATGGTCAG
CTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGCAGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGC
ATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGGTGCGCCACCGGTATTGCCGGAATTACTCAAGAGCG
AGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAATCTACCACGCTGGCGGCGATGGTTGGCTATCTCAAT
CAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAATATCTCTATGCCAGCCAGCGATGTTTGATCCAGCA
GCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCGGGCCGCATTGCGGGAAGATCCCGATGTGATTTTGC
TCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGGCAGCAGAAACCGGACACCTGGTGCTGGCAACTTTA
CATACGCGTGGTGCGGCGCAGGCAGTTGAGCGGCTGGTGGATTCATTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCA
ACTGGCAGGTAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGTGGATAAACAGGAAGGACGCGTGGCGCTGTTTGAAT
TGCTGGTTAACACACCCGCGGTGGGGAATTTGATTCGCGAAGGGAAAACCCACCAGTTACTGCATGTTATTCAAACCGGG
CAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGGGTGGGGGAAGGACGTTTGTGA

Upstream 100 bases:

>100_bases
ATGGCGCTCGCAGGTTTTGTTTTACTGACTGCAAGCAGCGTAATTTCTTCTGGAGAACGGCCGCAACGCGTTGCAGCCGC
TGAGATTTTGTCCCGGACCT

Downstream 100 bases:

>100_bases
CGTTGCCATGCCCGATGCGCAAGCTTATCGGGCATACAAAGGCAATAAATGTCTGATGCGACGCTAACACGTCTTATCAG
ACCTACAATCGCTGCCACAT

Product: twitching motility family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQ
LDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPAVGNLIREGKTHQLLHVIQTG
QQVGMLTFQQSYQQRVGEGRL

Sequences:

>Translated_341_residues
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQ
LDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLN
QHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPAVGNLIREGKTHQLLHVIQTG
QQVGMLTFQQSYQQRVGEGRL
>Mature_340_residues
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQL
DFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQ
HADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLH
TRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPAVGNLIREGKTHQLLHVIQTGQ
QVGMLTFQQSYQQRVGEGRL

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=326, Percent_Identity=97.8527607361963, Blast_Score=647, Evalue=0.0,
Organism=Escherichia coli, GI1789723, Length=282, Percent_Identity=35.8156028368794, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786296, Length=334, Percent_Identity=33.2335329341317, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37678; Mature: 37546

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVE
CCCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHH
LGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYAS
CCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLLHVIQTGQQVGMLTFQQSYQQRVGEGRL
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDAPDVE
CCHHHHHHHHHHHCCCHHHHHEEHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCHH
ELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRQGISLALRLLPSHCPQLEQ
HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHH
LGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYAS
CCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
QRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATL
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEE
HTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLVNTPA
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHCCCH
VGNLIREGKTHQLLHVIQTGQQVGMLTFQQSYQQRVGEGRL
HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]