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The map label for this gene is yeeS [H]

Identifier: 170680081

GI number: 170680081

Start: 1075904

End: 1076380

Strand: Reverse

Name: yeeS [H]

Synonym: EcSMS35_1062

Alternate gene names: 170680081

Gene position: 1076380-1075904 (Counterclockwise)

Preceding gene: 170680572

Following gene: 170683714

Centisome position: 21.24

GC content: 57.65

Gene sequence:

>477_bases
ATGCAACAACTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGCCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACTGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Upstream 100 bases:

>100_bases
TGCCATGACGGTCCATTATTACCGGCTGCGGGATTACGCCCTGCAGCATCCGGAATGCAGCGCCATTATGCGCATCATCG
ACTGAATGGAGAGAAGCACA

Downstream 100 bases:

>100_bases
CCCGTCACAACCACATCACACCTGTTTTCACTTTTATCTTCTGTCTTCAGAGGTATCCCATTATGAAAATTATCACCCGT
GGCGAAGCCATGCGTATTCA

Product: RadC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Sequences:

>Translated_158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
>Mature_158_residues
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Specific function: Unknown

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI1788312, Length=148, Percent_Identity=97.972972972973, Blast_Score=292, Evalue=8e-81,
Organism=Escherichia coli, GI2367100, Length=158, Percent_Identity=81.0126582278481, Blast_Score=265, Evalue=1e-72,
Organism=Escherichia coli, GI1788997, Length=140, Percent_Identity=77.1428571428572, Blast_Score=225, Evalue=1e-60,
Organism=Escherichia coli, GI87082300, Length=123, Percent_Identity=47.9674796747967, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 17647; Mature: 17647

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCEE
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD
EEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH
CLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
HHHHHHHHHHHCEEEEECCCEEEECCHHHHHHHHCCCC
>Mature Secondary Structure
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCEE
VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKAD
EEEECCCCCEEECCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH
CLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
HHHHHHHHHHHCEEEEECCCEEEECCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]