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The map label for this gene is yggD [H]

Identifier: 170679690

GI number: 170679690

Start: 3159664

End: 3160173

Strand: Reverse

Name: yggD [H]

Synonym: EcSMS35_3071

Alternate gene names: 170679690

Gene position: 3160173-3159664 (Counterclockwise)

Preceding gene: 170680034

Following gene: 170681606

Centisome position: 62.35

GC content: 49.02

Gene sequence:

>510_bases
ATGGCGACGCTGACAGAAGATGATGTGCTTGAGCAACTGGAGGCACAGGACAATTTATTTTCATTTATGAAAACGGCGCA
TTCTATTTTGCTCCAGGGGATACGCCAGTTTCTACCGTCGCTGTTTGTCGATAACGATGAAGAGATCGTCGAATATGCAG
TGAAGCCGTTACTCGCCCAAAGCGGCCCGCTTGACGATATTGATGTTGCACTGCGTTTGATTTATGCGCTGGGGAAAATG
GATAAATGGCTGTACGCCGATATCACGCACTTTTCCCAGTTCTGGCATTACCTGAACGAACAGAATGAAATGCCCGGATT
TGCCGATGATATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGACGCTCTATGACGCGTTGAAAG
CGATGAAGTTCGCCGATTTCGCCGTCTGGTCAGAGGCGCGTTTTAGCGGGATGGTCAAAACGGCGCTGACGCTGGCAGTA
ACGACCACCTTAAAGGAATTAACGCCGTGA

Upstream 100 bases:

>100_bases
GGCGAATGGGGTGCGGACGCAGACATTACTGATCGGCGGCGCGGACCAAACGTGTAATATAATAGACTCCCTGCATTGAT
GGTGATCTATCGGAAGACCA

Downstream 100 bases:

>100_bases
AAATTGAATTAACGGTGAATGGTCTGAAGGTACAAGCACAGTACCATGTTGATGAGATAGAAAATGTACATAAACCGTTG
CTGCGCATGTTGGCGGCCTT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MATLTEDDVLEQLEAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQFWHYLNEQNEMPGFADDMTWDFISNVNSITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
TTTLKELTP

Sequences:

>Translated_169_residues
MATLTEDDVLEQLEAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQFWHYLNEQNEMPGFADDMTWDFISNVNSITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
TTTLKELTP
>Mature_168_residues
ATLTEDDVLEQLEAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMD
KWLYADITHFSQFWHYLNEQNEMPGFADDMTWDFISNVNSITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVT
TTLKELTP

Specific function: Unknown

COG id: COG3722

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli mtlR [H]

Homologues:

Organism=Escherichia coli, GI1789297, Length=169, Percent_Identity=96.4497041420118, Blast_Score=314, Evalue=2e-87,
Organism=Escherichia coli, GI1790029, Length=105, Percent_Identity=36.1904761904762, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007761 [H]

Pfam domain/function: PF05068 MtlR [H]

EC number: NA

Molecular weight: Translated: 19255; Mature: 19124

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLTEDDVLEQLEAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQNEMPGFADDMTWDFISNVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATLTEDDVLEQLEAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEEIVEYAVKPLLAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQNEMPGFADDMTWDFISNVN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAVTTTLKELTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 2546007 [H]