| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079434
Identifier: 170079434
GI number: 170079434
Start: 2976861
End: 2979410
Strand: Reverse
Name: 170079434
Synonym: SYNPCC7002_A2849
Alternate gene names: NA
Gene position: 2979410-2976861 (Counterclockwise)
Preceding gene: 170079435
Following gene: 170079429
Centisome position: 99.05
GC content: 52.51
Gene sequence:
>2550_bases GTGAATACGGCCTCTCAAATTCAGCTTAGCGAAGCAGACACCCAAATTTTGTTAGATTGGGCAGCCCAAGTGACCCATTC CAATGAAAGTTATTTCCACAAGGGGCAACGCCTCGCCAAACGCTTGGGGGCCCATTACCGGGCGGATGGCCTCACGGAGA TCGGTTTCTGGACACCGGAACTGGCAGGGGAAGTGATCCAAACAAACCGCGATATTTTCTTAGAAGTCTTTACCCCCCTC GAAGCGGTAGACTTTAGCGCCCCCAGCCAAACCATTAAGTGCCGCCGGGACTGTGTAGAACTCAAACAGCAGGGGGAATT CTGTTGGGGGGTAGTTGCGGGGATGCATCCAGGCACGAGGAAGCAAATGGGCTCTCTGTACTGGTTGCGCTACTGTGATC GCCTCCAGAATGAAATTTCGATCATCCGTGATGTTTTGGCCTATTCTCTGCCCTATGGGGTTTTTGGGCCAGCGGAACTC TACGACATGGACAGCCTCCAGCGGCAGCGGACAGACCTTGCCTATTTTGAGGCCCATTCGACCCCCCTCGACCCCGACCA AGCCTCCTGGGAACGGCCGATCCTTGATAATGCCAATGAAGTGCTGCCCCGGGTGCCAGCCCCTTTAAATATTTTGCAGG TTCACCTCAAAACAGCATCCCCCGAAGGAACCCTAGCGGGCCTGACCCAGGTTTACCAGCGCCTCTCGGAAAAGATTGCC GCCGGAGAACCCCTCACCGCTGCCGAACAAAATTATGTCGGTTACGACGCGCTGCAGTTGCTCCCCATTGAACCCACCAT TGAATATCGCCTTGAGGGGGACAACCGCCACCACGAATTTTTTGCGATCGCCCCCAATGAAGCTATTGAAACCGGAGAAA TGGCCTGTGGCCTCGAAGTAGAAGTCACCCTCCGCAAGGCCAAAACCCAAAATTGGGGCTATGATGTGCCGATTTTAGGG TCGGCGGCGACCAACCCAACAATCCTCAGTAGCCTCCGTCCCGATGAATTGGTGGACTTTATCAGTACCCTCCATAATTT TGCGGGGGGGCCGATCCAAATTATTTATGATCTGGTCTATGGCCATGCGGACAATCAATCGTTGGAACTCCTGAACAATC AGTACCTCAAAGGCCCAAATATGTACGGGCAGGATCTGAACCACCAATTACCCCAAGTGCGGGCGATCCTTCTAGAGTTG CAACGGCGGCGTATTAACTCCGGGGCCGACGGCATTCGCATTGATGGCGGGCAAGATTTCCGCTTCTTTAATCCCCTTTC CGGTCGCGTTGAGCAGGATGATGCTTATCTGTTGGCGATGAGTGATGTGATTCAGGATATTGGCGATCGCCAACGGTTAC TCTTCACCATCTTTGAAGACGGTCGGCCCTGGCCCGAAGAAGGCTGGGAAAATTCTTCAACCTATCGCGATTTGATCGAA TTACGCCCAGAATCCTACCAGTGGGGGCCATTGATTTTTGCCCACAATACACCCACCATCGAAGGGTTTTGGGATTATAA ATGGAACCGCATTATTGAAGTGATGTTCCAAGGCGATCGCTGGATCACCGGTTGTGCCAACCACGATACGGTGCGTCGGG GGAACCAAATCGATGCCCAAGCCGCCGCCATTAACTGGCATTTGGGCGCGACCCTCAACGAAGTTATTTTAAATGCCTAC GATAATCCGGCGACTACCCTCTGGGTCTATGGCTTTATGCCCGGCCTGCCGATGGATTTTATTAATTCTTTGATGCGGGC ACCCTGGGGCTTTTTCCGCAATACTGACGAACTTTATGGGGTCAAAGTCGCGGCGGAAGAAGTGGGCTTTTTGGACTGGC AGATTACTCCTGAATTATTTGCTAAACCCTGGGCCTTCCGGCACCTCAAACAGTTGGGCTTTGAGGATCTAGATTTTCTG AAGCGGTTTATGCGCGCCTTGAACGAGGCGATGATCGTCACAGATTACGATTTACAGAGAACCGCCGATCTGTGCCAACG TTGTATTGGTAATCCCGACGGGGTCTGTGAAGTCAAACCGATGCAGGAAATTGGGGAGTCCGATCACCAGGCTTTCCTCG ACCATTTAACGGTGCCGAAACTGAAGACCATTGCCATGGCGTTTATGGAGGATGGCCACGAAACCTGTCGGGTTTCCCAT TATCTCGACCGGGTTGATTCCGCCCAGACGGAATTTAACTTAGCCCTGCGGGAATATCGTCGCGCTCACCCTTGGCTGCG GGAAAATCTCCAGGAAGGCGATCGCTTTAATCGCCTCAGCAATGAGGAACACACGATCTTTTACGGTCTGCGCACGGAAC CCCTTGAGGATGAAAGTGACCAAACCCCAGAACAAATCGTGATGGTGACCCACATGGGCGGCGAACCAACCACCATTACC CTCGGTGATTGGCTCCAGTTGGATCTTTCTGAATGGCGTGTGGCGATCGCCACCCCTGGTTTAGACATTGGTCAAACAGA AGATGCGCTGAAGATCTTTGAATTAAAAGATAGCCAAGGCCTCGTTCTTGAGCGTATTTTTGACGAGTAA
Upstream 100 bases:
>100_bases ATAAGTCATTCGGCAGATGCGAGGATGCATGGGTTGGCAACGGGCGATCGCCCCAGGCACCCGATCCGATGAATTAGTTG TTGTTACGGTTACTTAGATA
Downstream 100 bases:
>100_bases AAGCTAATGGTCTTGTTAGATCATTCATCCTAGGACTATCGAATGATGTTGCAAAATCAGAAAAGATAGGTTGCAGATAG TCCATAATGATCTGACAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MNTASQIQLSEADTQILLDWAAQVTHSNESYFHKGQRLAKRLGAHYRADGLTEIGFWTPELAGEVIQTNRDIFLEVFTPL EAVDFSAPSQTIKCRRDCVELKQQGEFCWGVVAGMHPGTRKQMGSLYWLRYCDRLQNEISIIRDVLAYSLPYGVFGPAEL YDMDSLQRQRTDLAYFEAHSTPLDPDQASWERPILDNANEVLPRVPAPLNILQVHLKTASPEGTLAGLTQVYQRLSEKIA AGEPLTAAEQNYVGYDALQLLPIEPTIEYRLEGDNRHHEFFAIAPNEAIETGEMACGLEVEVTLRKAKTQNWGYDVPILG SAATNPTILSSLRPDELVDFISTLHNFAGGPIQIIYDLVYGHADNQSLELLNNQYLKGPNMYGQDLNHQLPQVRAILLEL QRRRINSGADGIRIDGGQDFRFFNPLSGRVEQDDAYLLAMSDVIQDIGDRQRLLFTIFEDGRPWPEEGWENSSTYRDLIE LRPESYQWGPLIFAHNTPTIEGFWDYKWNRIIEVMFQGDRWITGCANHDTVRRGNQIDAQAAAINWHLGATLNEVILNAY DNPATTLWVYGFMPGLPMDFINSLMRAPWGFFRNTDELYGVKVAAEEVGFLDWQITPELFAKPWAFRHLKQLGFEDLDFL KRFMRALNEAMIVTDYDLQRTADLCQRCIGNPDGVCEVKPMQEIGESDHQAFLDHLTVPKLKTIAMAFMEDGHETCRVSH YLDRVDSAQTEFNLALREYRRAHPWLRENLQEGDRFNRLSNEEHTIFYGLRTEPLEDESDQTPEQIVMVTHMGGEPTTIT LGDWLQLDLSEWRVAIATPGLDIGQTEDALKIFELKDSQGLVLERIFDE
Sequences:
>Translated_849_residues MNTASQIQLSEADTQILLDWAAQVTHSNESYFHKGQRLAKRLGAHYRADGLTEIGFWTPELAGEVIQTNRDIFLEVFTPL EAVDFSAPSQTIKCRRDCVELKQQGEFCWGVVAGMHPGTRKQMGSLYWLRYCDRLQNEISIIRDVLAYSLPYGVFGPAEL YDMDSLQRQRTDLAYFEAHSTPLDPDQASWERPILDNANEVLPRVPAPLNILQVHLKTASPEGTLAGLTQVYQRLSEKIA AGEPLTAAEQNYVGYDALQLLPIEPTIEYRLEGDNRHHEFFAIAPNEAIETGEMACGLEVEVTLRKAKTQNWGYDVPILG SAATNPTILSSLRPDELVDFISTLHNFAGGPIQIIYDLVYGHADNQSLELLNNQYLKGPNMYGQDLNHQLPQVRAILLEL QRRRINSGADGIRIDGGQDFRFFNPLSGRVEQDDAYLLAMSDVIQDIGDRQRLLFTIFEDGRPWPEEGWENSSTYRDLIE LRPESYQWGPLIFAHNTPTIEGFWDYKWNRIIEVMFQGDRWITGCANHDTVRRGNQIDAQAAAINWHLGATLNEVILNAY DNPATTLWVYGFMPGLPMDFINSLMRAPWGFFRNTDELYGVKVAAEEVGFLDWQITPELFAKPWAFRHLKQLGFEDLDFL KRFMRALNEAMIVTDYDLQRTADLCQRCIGNPDGVCEVKPMQEIGESDHQAFLDHLTVPKLKTIAMAFMEDGHETCRVSH YLDRVDSAQTEFNLALREYRRAHPWLRENLQEGDRFNRLSNEEHTIFYGLRTEPLEDESDQTPEQIVMVTHMGGEPTTIT LGDWLQLDLSEWRVAIATPGLDIGQTEDALKIFELKDSQGLVLERIFDE >Mature_849_residues MNTASQIQLSEADTQILLDWAAQVTHSNESYFHKGQRLAKRLGAHYRADGLTEIGFWTPELAGEVIQTNRDIFLEVFTPL EAVDFSAPSQTIKCRRDCVELKQQGEFCWGVVAGMHPGTRKQMGSLYWLRYCDRLQNEISIIRDVLAYSLPYGVFGPAEL YDMDSLQRQRTDLAYFEAHSTPLDPDQASWERPILDNANEVLPRVPAPLNILQVHLKTASPEGTLAGLTQVYQRLSEKIA AGEPLTAAEQNYVGYDALQLLPIEPTIEYRLEGDNRHHEFFAIAPNEAIETGEMACGLEVEVTLRKAKTQNWGYDVPILG SAATNPTILSSLRPDELVDFISTLHNFAGGPIQIIYDLVYGHADNQSLELLNNQYLKGPNMYGQDLNHQLPQVRAILLEL QRRRINSGADGIRIDGGQDFRFFNPLSGRVEQDDAYLLAMSDVIQDIGDRQRLLFTIFEDGRPWPEEGWENSSTYRDLIE LRPESYQWGPLIFAHNTPTIEGFWDYKWNRIIEVMFQGDRWITGCANHDTVRRGNQIDAQAAAINWHLGATLNEVILNAY DNPATTLWVYGFMPGLPMDFINSLMRAPWGFFRNTDELYGVKVAAEEVGFLDWQITPELFAKPWAFRHLKQLGFEDLDFL KRFMRALNEAMIVTDYDLQRTADLCQRCIGNPDGVCEVKPMQEIGESDHQAFLDHLTVPKLKTIAMAFMEDGHETCRVSH YLDRVDSAQTEFNLALREYRRAHPWLRENLQEGDRFNRLSNEEHTIFYGLRTEPLEDESDQTPEQIVMVTHMGGEPTTIT LGDWLQLDLSEWRVAIATPGLDIGQTEDALKIFELKDSQGLVLERIFDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96859; Mature: 96859
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTASQIQLSEADTQILLDWAAQVTHSNESYFHKGQRLAKRLGAHYRADGLTEIGFWTPE CCCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH LAGEVIQTNRDIFLEVFTPLEAVDFSAPSQTIKCRRDCVELKQQGEFCWGVVAGMHPGTR HHHHHHHCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCHH KQMGSLYWLRYCDRLQNEISIIRDVLAYSLPYGVFGPAELYDMDSLQRQRTDLAYFEAHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHCCHHEEECCC TPLDPDQASWERPILDNANEVLPRVPAPLNILQVHLKTASPEGTLAGLTQVYQRLSEKIA CCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH AGEPLTAAEQNYVGYDALQLLPIEPTIEYRLEGDNRHHEFFAIAPNEAIETGEMACGLEV CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCCHHCCCCCCCCCEE EVTLRKAKTQNWGYDVPILGSAATNPTILSSLRPDELVDFISTLHNFAGGPIQIIYDLVY EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH GHADNQSLELLNNQYLKGPNMYGQDLNHQLPQVRAILLELQRRRINSGADGIRIDGGQDF CCCCCCHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC RFFNPLSGRVEQDDAYLLAMSDVIQDIGDRQRLLFTIFEDGRPWPEEGWENSSTYRDLIE EEECCCCCCCCCCCEEEEEHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH LRPESYQWGPLIFAHNTPTIEGFWDYKWNRIIEVMFQGDRWITGCANHDTVRRGNQIDAQ CCCCCCCCCCEEEECCCCCCCCEECCHHHHHHHEEECCCCEEEECCCCCHHHCCCCCCCE AAAINWHLGATLNEVILNAYDNPATTLWVYGFMPGLPMDFINSLMRAPWGFFRNTDELYG EEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCCCCHHHE VKVAAEEVGFLDWQITPELFAKPWAFRHLKQLGFEDLDFLKRFMRALNEAMIVTDYDLQR EEEEHHHCCCEEEEECHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHH TADLCQRCIGNPDGVCEVKPMQEIGESDHQAFLDHLTVPKLKTIAMAFMEDGHETCRVSH HHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH YLDRVDSAQTEFNLALREYRRAHPWLRENLQEGDRFNRLSNEEHTIFYGLRTEPLEDESD HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCC QTPEQIVMVTHMGGEPTTITLGDWLQLDLSEWRVAIATPGLDIGQTEDALKIFELKDSQG CCCCCEEEEEECCCCCCEEEECCCEEEEHHHCEEEEECCCCCCCCCCCCEEEEEECCCCC LVLERIFDE HHHHHHHCC >Mature Secondary Structure MNTASQIQLSEADTQILLDWAAQVTHSNESYFHKGQRLAKRLGAHYRADGLTEIGFWTPE CCCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH LAGEVIQTNRDIFLEVFTPLEAVDFSAPSQTIKCRRDCVELKQQGEFCWGVVAGMHPGTR HHHHHHHCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCHH KQMGSLYWLRYCDRLQNEISIIRDVLAYSLPYGVFGPAELYDMDSLQRQRTDLAYFEAHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHCCHHEEECCC TPLDPDQASWERPILDNANEVLPRVPAPLNILQVHLKTASPEGTLAGLTQVYQRLSEKIA CCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH AGEPLTAAEQNYVGYDALQLLPIEPTIEYRLEGDNRHHEFFAIAPNEAIETGEMACGLEV CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCCCHHCCCCCCCCCEE EVTLRKAKTQNWGYDVPILGSAATNPTILSSLRPDELVDFISTLHNFAGGPIQIIYDLVY EEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH GHADNQSLELLNNQYLKGPNMYGQDLNHQLPQVRAILLELQRRRINSGADGIRIDGGQDF CCCCCCHHHHHHCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC RFFNPLSGRVEQDDAYLLAMSDVIQDIGDRQRLLFTIFEDGRPWPEEGWENSSTYRDLIE EEECCCCCCCCCCCEEEEEHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH LRPESYQWGPLIFAHNTPTIEGFWDYKWNRIIEVMFQGDRWITGCANHDTVRRGNQIDAQ CCCCCCCCCCEEEECCCCCCCCEECCHHHHHHHEEECCCCEEEECCCCCHHHCCCCCCCE AAAINWHLGATLNEVILNAYDNPATTLWVYGFMPGLPMDFINSLMRAPWGFFRNTDELYG EEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCCCCHHHE VKVAAEEVGFLDWQITPELFAKPWAFRHLKQLGFEDLDFLKRFMRALNEAMIVTDYDLQR EEEEHHHCCCEEEEECHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCHHH TADLCQRCIGNPDGVCEVKPMQEIGESDHQAFLDHLTVPKLKTIAMAFMEDGHETCRVSH HHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH YLDRVDSAQTEFNLALREYRRAHPWLRENLQEGDRFNRLSNEEHTIFYGLRTEPLEDESD HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCC QTPEQIVMVTHMGGEPTTITLGDWLQLDLSEWRVAIATPGLDIGQTEDALKIFELKDSQG CCCCCEEEEEECCCCCCEEEECCCEEEEHHHCEEEEECCCCCCCCCCCCEEEEEECCCCC LVLERIFDE HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA