| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079428
Identifier: 170079428
GI number: 170079428
Start: 2967507
End: 2969855
Strand: Reverse
Name: 170079428
Synonym: SYNPCC7002_A2843
Alternate gene names: NA
Gene position: 2969855-2967507 (Counterclockwise)
Preceding gene: 170079429
Following gene: 170079427
Centisome position: 98.73
GC content: 51.94
Gene sequence:
>2349_bases GTGAATATTTCACCCCCCATTCAACTTGTCGAAGCCCCCACCCAAGCTTTACTGACCTGGGCTAAGGCGATCGCCACGGG CACCCCAGACCCATTTCAGCGGGGGCAACAACTGAGTCAGAAATTGGGCGCAACCTATGGCAGTGATGGCCTAACCCAAA TAGGATTCTGGATTCCGGAGGTGGGCGATCGCCCCGTTTACCTCGAAATTTTTACGCCCATGGAGGCAATCGATTTTCGC CTTGCTGATCAAGTCATTCCGTTCCGTCGGGAGGTGCTAGAACTGCCGCGCCAGGGGGAATTTGCCTGGGCCGTTGTGGC GGGTCTCAAAGCTGGCACCCGTACCCAAGCGGGATCGTTTTACTGGTTGCGCAGTGGTGAACAGATTATCCGCGATGTCT TTGCCCACTCTCTGCCCTACGGTGTGTTTGCGCCAGCCGAGCTGTACGACATGGCGCAACTGGAGCGCGACAGGGCCGAC CGCGACTATTTTCACCAGGAAACTTGGGTCACACCGCCCCGCAATATTTTGCAGATTCATGTGGGTACCGCTTCCCCCAC GGGCACCCTAGCCGGACTCAGCCGCATTTACCGTGACCTCGCCCGCAAATTGGCCAATAGCCAACCCCTCACCGCCGCTG AAAAAAACTATGTGGGCTTTGATGCGATTGAACTGTTACCCATTGAACCCACGGTGGAATTTCGCCCCGCCGAAAATGAA ATGATTCATGCTTTTTGGCAAATTCGGGCGATCACCAACCAAGAAGTGCAAGTCCACCTGAAAAAACCAGACACCCAAAA TTGGGGCTATGACGATCTGATTTTAGGGGCCGCGGCCACCAGTCCCGCCCTCCTCAGTACCCTCAGACCCACCGAAGTTG TGGATTTTATTGCCACGCTCCACACTGCCTTTGCCCGCCCGATCCAGATTATTTTTGACCTGGTTTATGGGCATATCCAT CACCAAGCCCTGGGATTAATCAATGCGCGATTTTTCCGGGGCGCAAATATGTATGGCCATGATACAAACCAGCAAAATCC GATGGTGCGGGCTGTTCTCCTGGAGTTGCAACGGCGAAAAATTAATCTAGGGGCCGATGGGATTCGGGTGGATGGGGGTC AAGATTTTCAGGTGTCCGACGCCATTTCCGGCCAACTAGACTATGACAATGATTTCCTGCTGAAGATGGCTGCGGTACCC CAAACCGTTGGTACAGCGACTCGCGAGTTGTACACCATTTATGAAGATGGCCGCCCCTGGCCCAATGTCGGTTGGGAAGA TATGGCTACCCATTTGGATTTAATTTACCTAAAGCCCGATTGTTTTCAGTGGAGTCCGTTGATCTTCGAGCATAATACGC CCACGTTACAGGGATTTTGGCAACGGGAATGGCGGGATGTGTGCAAAATTATGGCCCATGGCGATCGCTGGGTGACCGGT TGCGCCAACCATGACACGGTACGCAAGGGCAACCACATCAACACCGCCGCAATTCGGATTAATGAATATTTAGGGGATTC TTTGCCGGAAATTTTACAAAATGCCTACGATAATCCAGCAACCCAACTGTGGATCCATGGCTTTAGCCCAGGAATTCCGA TGGATTTTTTAAATGCATTAATGCACACTCCCTGGGGCTTTTTTCGGAATACAGATGACCAATATGCCGTCAAAATTATG GCGGACGAAATTGGCTTTCTCTATTGGCAAATTACGCCGGAAATTTACCGACAATCCTGGGCGTTTCGGCGGTTTAAAAC CATGGGCTTTTATGATCTCTCGTTAATGCGGCAGTTCTTTAAGGCAGTGGAACAGGCCATTGAAGCGATTGGCTATGATC TACCAAAGCTGGCGATTTTTCTGCAAACCGAATTAGAACCACAATTTGATTTTTTAAAGCCGATTACCATTGCCAACCTG AAGGAAATAGCGATCGCCTTTATGGAGGATGGCCACGAGGCTTGTCGGGTCTCCCATTATTGTGGATCGGTACCGGATGA GCGGGCGAGCTTTAATTTACGCTTGCGGCAATATCGCCAGGCCCAGCCTTGGCTGCGAAATCATCTCGATCCTGCAAGGG GCGATCGCCTGCACCATTGGTCGGATCACCAACGCACCATTTTCTACGGCAGGCGCACCAATCCCGACACCCAGCAGCGG CTTGTGTTAGTGGCGCACATGGCCGGGGCTCCGAAGACCGTTGAGATTGGCAAATGGCTCGCCCTGGATTTGGATCGTTG GCAGTTGGCGATCGCCACACCGACTTTGAAGATCAACACCATCTATGACTTAGCCCAAATTCACTTGCACAATGGCGAAG GTTTTCTGTTATCTGAAATTCCTCCCTAA
Upstream 100 bases:
>100_bases ACTAGCTTTGGAATTTTTTGTCACTAAGATCAACATAGTAAAATGGCGACTGTAGCAAGCACGGGTAAATTGTCAATTAC AGTTTTGCCCTAAGGTTCGC
Downstream 100 bases:
>100_bases ATGATGTCTTTTGAGCCTAAAAACACACTTTTTTGACCTAATTTAACCCATTTAAAAAACTTTATTTAATAATGACCATG GCCCATCAAAAATACATTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 782; Mature: 782
Protein sequence:
>782_residues MNISPPIQLVEAPTQALLTWAKAIATGTPDPFQRGQQLSQKLGATYGSDGLTQIGFWIPEVGDRPVYLEIFTPMEAIDFR LADQVIPFRREVLELPRQGEFAWAVVAGLKAGTRTQAGSFYWLRSGEQIIRDVFAHSLPYGVFAPAELYDMAQLERDRAD RDYFHQETWVTPPRNILQIHVGTASPTGTLAGLSRIYRDLARKLANSQPLTAAEKNYVGFDAIELLPIEPTVEFRPAENE MIHAFWQIRAITNQEVQVHLKKPDTQNWGYDDLILGAAATSPALLSTLRPTEVVDFIATLHTAFARPIQIIFDLVYGHIH HQALGLINARFFRGANMYGHDTNQQNPMVRAVLLELQRRKINLGADGIRVDGGQDFQVSDAISGQLDYDNDFLLKMAAVP QTVGTATRELYTIYEDGRPWPNVGWEDMATHLDLIYLKPDCFQWSPLIFEHNTPTLQGFWQREWRDVCKIMAHGDRWVTG CANHDTVRKGNHINTAAIRINEYLGDSLPEILQNAYDNPATQLWIHGFSPGIPMDFLNALMHTPWGFFRNTDDQYAVKIM ADEIGFLYWQITPEIYRQSWAFRRFKTMGFYDLSLMRQFFKAVEQAIEAIGYDLPKLAIFLQTELEPQFDFLKPITIANL KEIAIAFMEDGHEACRVSHYCGSVPDERASFNLRLRQYRQAQPWLRNHLDPARGDRLHHWSDHQRTIFYGRRTNPDTQQR LVLVAHMAGAPKTVEIGKWLALDLDRWQLAIATPTLKINTIYDLAQIHLHNGEGFLLSEIPP
Sequences:
>Translated_782_residues MNISPPIQLVEAPTQALLTWAKAIATGTPDPFQRGQQLSQKLGATYGSDGLTQIGFWIPEVGDRPVYLEIFTPMEAIDFR LADQVIPFRREVLELPRQGEFAWAVVAGLKAGTRTQAGSFYWLRSGEQIIRDVFAHSLPYGVFAPAELYDMAQLERDRAD RDYFHQETWVTPPRNILQIHVGTASPTGTLAGLSRIYRDLARKLANSQPLTAAEKNYVGFDAIELLPIEPTVEFRPAENE MIHAFWQIRAITNQEVQVHLKKPDTQNWGYDDLILGAAATSPALLSTLRPTEVVDFIATLHTAFARPIQIIFDLVYGHIH HQALGLINARFFRGANMYGHDTNQQNPMVRAVLLELQRRKINLGADGIRVDGGQDFQVSDAISGQLDYDNDFLLKMAAVP QTVGTATRELYTIYEDGRPWPNVGWEDMATHLDLIYLKPDCFQWSPLIFEHNTPTLQGFWQREWRDVCKIMAHGDRWVTG CANHDTVRKGNHINTAAIRINEYLGDSLPEILQNAYDNPATQLWIHGFSPGIPMDFLNALMHTPWGFFRNTDDQYAVKIM ADEIGFLYWQITPEIYRQSWAFRRFKTMGFYDLSLMRQFFKAVEQAIEAIGYDLPKLAIFLQTELEPQFDFLKPITIANL KEIAIAFMEDGHEACRVSHYCGSVPDERASFNLRLRQYRQAQPWLRNHLDPARGDRLHHWSDHQRTIFYGRRTNPDTQQR LVLVAHMAGAPKTVEIGKWLALDLDRWQLAIATPTLKINTIYDLAQIHLHNGEGFLLSEIPP >Mature_782_residues MNISPPIQLVEAPTQALLTWAKAIATGTPDPFQRGQQLSQKLGATYGSDGLTQIGFWIPEVGDRPVYLEIFTPMEAIDFR LADQVIPFRREVLELPRQGEFAWAVVAGLKAGTRTQAGSFYWLRSGEQIIRDVFAHSLPYGVFAPAELYDMAQLERDRAD RDYFHQETWVTPPRNILQIHVGTASPTGTLAGLSRIYRDLARKLANSQPLTAAEKNYVGFDAIELLPIEPTVEFRPAENE MIHAFWQIRAITNQEVQVHLKKPDTQNWGYDDLILGAAATSPALLSTLRPTEVVDFIATLHTAFARPIQIIFDLVYGHIH HQALGLINARFFRGANMYGHDTNQQNPMVRAVLLELQRRKINLGADGIRVDGGQDFQVSDAISGQLDYDNDFLLKMAAVP QTVGTATRELYTIYEDGRPWPNVGWEDMATHLDLIYLKPDCFQWSPLIFEHNTPTLQGFWQREWRDVCKIMAHGDRWVTG CANHDTVRKGNHINTAAIRINEYLGDSLPEILQNAYDNPATQLWIHGFSPGIPMDFLNALMHTPWGFFRNTDDQYAVKIM ADEIGFLYWQITPEIYRQSWAFRRFKTMGFYDLSLMRQFFKAVEQAIEAIGYDLPKLAIFLQTELEPQFDFLKPITIANL KEIAIAFMEDGHEACRVSHYCGSVPDERASFNLRLRQYRQAQPWLRNHLDPARGDRLHHWSDHQRTIFYGRRTNPDTQQR LVLVAHMAGAPKTVEIGKWLALDLDRWQLAIATPTLKINTIYDLAQIHLHNGEGFLLSEIPP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89257; Mature: 89257
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNISPPIQLVEAPTQALLTWAKAIATGTPDPFQRGQQLSQKLGATYGSDGLTQIGFWIPE CCCCCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCC VGDRPVYLEIFTPMEAIDFRLADQVIPFRREVLELPRQGEFAWAVVAGLKAGTRTQAGSF CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCE YWLRSGEQIIRDVFAHSLPYGVFAPAELYDMAQLERDRADRDYFHQETWVTPPRNILQIH EEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEE VGTASPTGTLAGLSRIYRDLARKLANSQPLTAAEKNYVGFDAIELLPIEPTVEFRPAENE ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHH MIHAFWQIRAITNQEVQVHLKKPDTQNWGYDDLILGAAATSPALLSTLRPTEVVDFIATL HHHHHHHEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHCCHHHHHHHHHHH HTAFARPIQIIFDLVYGHIHHQALGLINARFFRGANMYGHDTNQQNPMVRAVLLELQRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH INLGADGIRVDGGQDFQVSDAISGQLDYDNDFLLKMAAVPQTVGTATRELYTIYEDGRPW CCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEECCCCC PNVGWEDMATHLDLIYLKPDCFQWSPLIFEHNTPTLQGFWQREWRDVCKIMAHGDRWVTG CCCCHHHHHCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE CANHDTVRKGNHINTAAIRINEYLGDSLPEILQNAYDNPATQLWIHGFSPGIPMDFLNAL CCCCCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH MHTPWGFFRNTDDQYAVKIMADEIGFLYWQITPEIYRQSWAFRRFKTMGFYDLSLMRQFF HHCCCCHHCCCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCEEHHHHHHHHH KAVEQAIEAIGYDLPKLAIFLQTELEPQFDFLKPITIANLKEIAIAFMEDGHEACRVSHY HHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHH CGSVPDERASFNLRLRQYRQAQPWLRNHLDPARGDRLHHWSDHQRTIFYGRRTNPDTQQR HCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH LVLVAHMAGAPKTVEIGKWLALDLDRWQLAIATPTLKINTIYDLAQIHLHNGEGFLLSEI EEEEEECCCCCCEEECCCEEEEECCCEEEEEECCEEEEEEEEEEEEEEEECCCEEEECCC PP CC >Mature Secondary Structure MNISPPIQLVEAPTQALLTWAKAIATGTPDPFQRGQQLSQKLGATYGSDGLTQIGFWIPE CCCCCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCC VGDRPVYLEIFTPMEAIDFRLADQVIPFRREVLELPRQGEFAWAVVAGLKAGTRTQAGSF CCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCE YWLRSGEQIIRDVFAHSLPYGVFAPAELYDMAQLERDRADRDYFHQETWVTPPRNILQIH EEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEEEE VGTASPTGTLAGLSRIYRDLARKLANSQPLTAAEKNYVGFDAIELLPIEPTVEFRPAENE ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCHH MIHAFWQIRAITNQEVQVHLKKPDTQNWGYDDLILGAAATSPALLSTLRPTEVVDFIATL HHHHHHHEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHCCHHHHHHHHHHH HTAFARPIQIIFDLVYGHIHHQALGLINARFFRGANMYGHDTNQQNPMVRAVLLELQRRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH INLGADGIRVDGGQDFQVSDAISGQLDYDNDFLLKMAAVPQTVGTATRELYTIYEDGRPW CCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEECCCCC PNVGWEDMATHLDLIYLKPDCFQWSPLIFEHNTPTLQGFWQREWRDVCKIMAHGDRWVTG CCCCHHHHHCCEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE CANHDTVRKGNHINTAAIRINEYLGDSLPEILQNAYDNPATQLWIHGFSPGIPMDFLNAL CCCCCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH MHTPWGFFRNTDDQYAVKIMADEIGFLYWQITPEIYRQSWAFRRFKTMGFYDLSLMRQFF HHCCCCHHCCCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCEEHHHHHHHHH KAVEQAIEAIGYDLPKLAIFLQTELEPQFDFLKPITIANLKEIAIAFMEDGHEACRVSHY HHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHH CGSVPDERASFNLRLRQYRQAQPWLRNHLDPARGDRLHHWSDHQRTIFYGRRTNPDTQQR HCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH LVLVAHMAGAPKTVEIGKWLALDLDRWQLAIATPTLKINTIYDLAQIHLHNGEGFLLSEI EEEEEECCCCCCEEECCCEEEEECCCEEEEEECCEEEEEEEEEEEEEEEECCCEEEECCC PP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA