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The map label for this gene is glpQ [H]

Identifier: 170079424

GI number: 170079424

Start: 2962059

End: 2962946

Strand: Reverse

Name: glpQ [H]

Synonym: SYNPCC7002_A2838

Alternate gene names: 170079424

Gene position: 2962946-2962059 (Counterclockwise)

Preceding gene: 170079426

Following gene: 170079423

Centisome position: 98.5

GC content: 46.28

Gene sequence:

>888_bases
ATGCAATCGAGATTTTTTCAGCCGTCCGCACATCCCCTAATCTTGGGTCATCGAGGGGTTGTGACCGATCACCAAGAAAA
TACCATGGCGGGTTTCCAAAAGGCGATCGCCTTGGGTTTAGACGGCGTTGAACTCGATACTTTCCTCACAAAGGATGGCA
AATTGGTGGTTTTCCATGACCTCTATACCAAACGGCTGACGGGGGTCACGGGGAAAATTACTGAAATGACCTGGCCAGAG
ATCCAAACCCTGCGCATTAAAGATTCCCTCAAAATCGGCAAACAAATCTACACCTATCCCCAACCCGAAAAAATTCCTCT
CCTTGAAGATGTGTTGAGCGAACTGCGGGGCAAATTGTTAATCAATATCGAGATGAAAGCCCCCCGCCTCAACCTCCAGC
AACGGAAAACAGGCATTGCCGTCGCCCAATTGATCGAAAAAATGGGGCTGCAACAGGAAGCATTTGTTACCTCCTTTAGT
ATTTGGGCTTTGATCTGGCTGAAGCTCACCCATCACCCCATTGAAACAGGTATTCTCTACTCGCCTTTGGTGACCAAAAA
TTTCTTCATTCGCAAATTTACCGAAAGCCACATTTTAGAAAAAATCCTCGATGCCAGCTTAGTCAGTCTTAACGTTAATC
TATTTAAAAAACAAACCATTCAGCGACTCCATCAACACCAATTAGCCGTCGGCGCTTGGACAATCTTTTCACCGCCCCAT
AAAAGTCAAAACCCGAAAAAATTGGCCCAAGAATTAGCCCAGATTGATCGCCTTGTAGAACAAAACATTGATTATTTCAT
TACTGATCATCCCCGTCACCTCCAGCAGCATCTCCAGCAGCAACCGCAACCAATGGCTCAGCTCCTAGACGGCGGCGAAG
TATTCTAA

Upstream 100 bases:

>100_bases
CATGGAATTTGTAACTGTTTGTAAAGTTTACTGTCCCCATTATGCCCTGTCGCGCTGTTACTTTTTACCGTGGGAGAAGT
GATTAGAGGATTTTTCCGCG

Downstream 100 bases:

>100_bases
AGACGCAACAAAGACCAAACTAAACGATGACTTTTCGCCCTTTTACTCAGTTAATTCTCAAAACACATCTTCAACCAGCA
GCAGTACGACAAAGATTAGC

Product: glycerophosphoryl diester phosphodiesterase

Products: alcohol; sn-glycerol 3-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQSRFFQPSAHPLILGHRGVVTDHQENTMAGFQKAIALGLDGVELDTFLTKDGKLVVFHDLYTKRLTGVTGKITEMTWPE
IQTLRIKDSLKIGKQIYTYPQPEKIPLLEDVLSELRGKLLINIEMKAPRLNLQQRKTGIAVAQLIEKMGLQQEAFVTSFS
IWALIWLKLTHHPIETGILYSPLVTKNFFIRKFTESHILEKILDASLVSLNVNLFKKQTIQRLHQHQLAVGAWTIFSPPH
KSQNPKKLAQELAQIDRLVEQNIDYFITDHPRHLQQHLQQQPQPMAQLLDGGEVF

Sequences:

>Translated_295_residues
MQSRFFQPSAHPLILGHRGVVTDHQENTMAGFQKAIALGLDGVELDTFLTKDGKLVVFHDLYTKRLTGVTGKITEMTWPE
IQTLRIKDSLKIGKQIYTYPQPEKIPLLEDVLSELRGKLLINIEMKAPRLNLQQRKTGIAVAQLIEKMGLQQEAFVTSFS
IWALIWLKLTHHPIETGILYSPLVTKNFFIRKFTESHILEKILDASLVSLNVNLFKKQTIQRLHQHQLAVGAWTIFSPPH
KSQNPKKLAQELAQIDRLVEQNIDYFITDHPRHLQQHLQQQPQPMAQLLDGGEVF
>Mature_295_residues
MQSRFFQPSAHPLILGHRGVVTDHQENTMAGFQKAIALGLDGVELDTFLTKDGKLVVFHDLYTKRLTGVTGKITEMTWPE
IQTLRIKDSLKIGKQIYTYPQPEKIPLLEDVLSELRGKLLINIEMKAPRLNLQQRKTGIAVAQLIEKMGLQQEAFVTSFS
IWALIWLKLTHHPIETGILYSPLVTKNFFIRKFTESHILEKILDASLVSLNVNLFKKQTIQRLHQHQLAVGAWTIFSPPH
KSQNPKKLAQELAQIDRLVEQNIDYFITDHPRHLQQHLQQQPQPMAQLLDGGEVF

Specific function: Glycerophosphoryl Diester Phosphodiesterase Hydrolyzes Deacylated Phospholipids To G3p And The Corresponding Alcohols. [C]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763878, Length=113, Percent_Identity=36.283185840708, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI260763880, Length=113, Percent_Identity=36.283185840708, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI260763876, Length=113, Percent_Identity=36.283185840708, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542344, Length=175, Percent_Identity=32.5714285714286, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6325050, Length=240, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: 3.1.4.46

Molecular weight: Translated: 33799; Mature: 33799

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRFFQPSAHPLILGHRGVVTDHQENTMAGFQKAIALGLDGVELDTFLTKDGKLVVFHD
CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHEECCCCCEEEEEH
LYTKRLTGVTGKITEMTWPEIQTLRIKDSLKIGKQIYTYPQPEKIPLLEDVLSELRGKLL
HHHHHHCCCCCCEECCCCCCEEEEEEHHHHHHCHHHCCCCCCCCCCHHHHHHHHHCCEEE
INIEMKAPRLNLQQRKTGIAVAQLIEKMGLQQEAFVTSFSIWALIWLKLTHHPIETGILY
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCEE
SPLVTKNFFIRKFTESHILEKILDASLVSLNVNLFKKQTIQRLHQHQLAVGAWTIFSPPH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
KSQNPKKLAQELAQIDRLVEQNIDYFITDHPRHLQQHLQQQPQPMAQLLDGGEVF
CCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure
MQSRFFQPSAHPLILGHRGVVTDHQENTMAGFQKAIALGLDGVELDTFLTKDGKLVVFHD
CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHEECCCCCEEEEEH
LYTKRLTGVTGKITEMTWPEIQTLRIKDSLKIGKQIYTYPQPEKIPLLEDVLSELRGKLL
HHHHHHCCCCCCEECCCCCCEEEEEEHHHHHHCHHHCCCCCCCCCCHHHHHHHHHCCEEE
INIEMKAPRLNLQQRKTGIAVAQLIEKMGLQQEAFVTSFSIWALIWLKLTHHPIETGILY
EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCEE
SPLVTKNFFIRKFTESHILEKILDASLVSLNVNLFKKQTIQRLHQHQLAVGAWTIFSPPH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
KSQNPKKLAQELAQIDRLVEQNIDYFITDHPRHLQQHLQQQPQPMAQLLDGGEVF
CCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.6 {bis(glycerophospho)glycerol}} 0.2 {glycerophosphoethanolamine}} [C]

Substrates: glycerophosphodiester; H2O

Specific reaction: A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate

General reaction: Hydrolysis of carboxylic diester [C]

Inhibitor: EDTA; Mg2+; Mn2+ [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 8759838 [H]