| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079322
Identifier: 170079322
GI number: 170079322
Start: 2855581
End: 2856081
Strand: Reverse
Name: 170079322
Synonym: SYNPCC7002_A2730
Alternate gene names: NA
Gene position: 2856081-2855581 (Counterclockwise)
Preceding gene: 170079323
Following gene: 170079321
Centisome position: 94.95
GC content: 53.29
Gene sequence:
>501_bases ATGCTAGCAATGTGCAAACGGCTAATGGCGATCGCCTTGGTTGTGGGGATTGTAAGTTTCGCCTGGGGCAATTTTGACCC ACCAAAGGCCTGGGCTGTAGACTACAACAAGCGCACCTTTATTCAAGAAGATTTTTCCCACCAGGACTTGCGGGACAATA GTTACGATCTCTCTAGTCTCCGGGGCTGCGATTTTAGTTACTCAGACCTGCGGGGGGTGCGTTTTTTCTCGGCTAATCTC GAATTCGTCAACTTTGAAGGGGCTGATCTCCGGGGAGCCGTCTTAGATTCTGCCCGCATTGGCCACGCGAACTTTAAAAA TGCCAACCTAGAGGGGGCTTTCCTCGCCAGCGTCAAAATTACGCCATCCACAGTCATTGAAGGGGCCGATTTCACCGATG CCCTGATCTTGGCGCGGGAAAATGACAAGCTTTGCGAACTGGCCAGCGGCACCAATCCCACCACAGGCCGTGACACCGCA GCAACCCTATACTGCCCCTAG
Upstream 100 bases:
>100_bases TTTGATCCAGGCCAATCCTGCGGACGTATTTTGTTGGGGTCGATTCCCGATAAAATAGGCTTGAGTGAACTTTACGAAAA GAGCTTGGGAGCTGACTGGT
Downstream 100 bases:
>100_bases GTATTTCCATTAAATTTCAAAGGCTGAATCACTGCCCATTGACCACCTGAGCGACCCTGGCGAGGTGGTTTTTGTTTGGG GTTTTATTGACTTTCAACGA
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: Pentapeptide Repeat Protein; Secreted Pentapeptide Repeats Protein; RfrA Pentapeptide Repeat-Containing Protein; Pentapeptide Repeat Family Protein
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MLAMCKRLMAIALVVGIVSFAWGNFDPPKAWAVDYNKRTFIQEDFSHQDLRDNSYDLSSLRGCDFSYSDLRGVRFFSANL EFVNFEGADLRGAVLDSARIGHANFKNANLEGAFLASVKITPSTVIEGADFTDALILARENDKLCELASGTNPTTGRDTA ATLYCP
Sequences:
>Translated_166_residues MLAMCKRLMAIALVVGIVSFAWGNFDPPKAWAVDYNKRTFIQEDFSHQDLRDNSYDLSSLRGCDFSYSDLRGVRFFSANL EFVNFEGADLRGAVLDSARIGHANFKNANLEGAFLASVKITPSTVIEGADFTDALILARENDKLCELASGTNPTTGRDTA ATLYCP >Mature_166_residues MLAMCKRLMAIALVVGIVSFAWGNFDPPKAWAVDYNKRTFIQEDFSHQDLRDNSYDLSSLRGCDFSYSDLRGVRFFSANL EFVNFEGADLRGAVLDSARIGHANFKNANLEGAFLASVKITPSTVIEGADFTDALILARENDKLCELASGTNPTTGRDTA ATLYCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18231; Mature: 18231
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAMCKRLMAIALVVGIVSFAWGNFDPPKAWAVDYNKRTFIQEDFSHQDLRDNSYDLSSL CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCHHHH RGCDFSYSDLRGVRFFSANLEFVNFEGADLRGAVLDSARIGHANFKNANLEGAFLASVKI CCCCCCHHHCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEE TPSTVIEGADFTDALILARENDKLCELASGTNPTTGRDTAATLYCP CHHHEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEEEECC >Mature Secondary Structure MLAMCKRLMAIALVVGIVSFAWGNFDPPKAWAVDYNKRTFIQEDFSHQDLRDNSYDLSSL CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCHHHH RGCDFSYSDLRGVRFFSANLEFVNFEGADLRGAVLDSARIGHANFKNANLEGAFLASVKI CCCCCCHHHCCCEEEEECCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEE TPSTVIEGADFTDALILARENDKLCELASGTNPTTGRDTAATLYCP CHHHEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA