| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170079303
Identifier: 170079303
GI number: 170079303
Start: 2840161
End: 2841174
Strand: Reverse
Name: 170079303
Synonym: SYNPCC7002_A2710
Alternate gene names: NA
Gene position: 2841174-2840161 (Counterclockwise)
Preceding gene: 170079304
Following gene: 170079295
Centisome position: 94.45
GC content: 45.27
Gene sequence:
>1014_bases ATGGCAAACCAGAGCCCCCCGAATTTGGCGATCGCCTATGTCCATTTCTATGTAGACGATCTGGATTATTGGCAAACCTG GTTTCAAACAAAATTTCAACTCAACATCACCGCTCCCCAAGCAACATTTCCGTTTTTACCTGAGAACACCATTCAACTCA GTAGCCCAGAGTTAACCCTGATGCTCTCGGCACCCCAATCCCCTGCCGATCCGGTCGCCCAGTATTTAACCCATCATCCC TGTGGTGTTGCGGATGTCGCCTTTTATATTGACCAAAAAGCTTTTTTTCAACCAAAAAATACTGATCAATCTGTTACCGT ATTACGCAATAATGTTGGGTTTCAACACACCCTTATTTATCGAGATACAGTTCCTAGAACGAATACCCAAATCGATCATT TAGTGCTCAATGTACCAGTAGGAAAACTTCAAGAAACGGTGCAATGGTACGAAGATAAATTTGGGTTTAACCGTCAGCAA ACTTTTACGATCAAAACCAACTATTCCGGCCTCGCTTCCCAGGTTCTTTCCCATCCCAGCGGAATTCAACTACCCATTAA TCAACCGGGAGACTGCTGTGAAAATCCGGAAACGGCACAGCGTTCCCAAATCCAAGAATTTATCGAGTTTAATCGTGGTG CTGGGATTCAACATATCGCCCTAAAATACAAAAACTTACCGGAGCAAATCGGGCACTTTCGCCGGACAAATATGGCATTT CTCGACGTTCCGGCCACCTATTACAAGAATCTCTATGATCGCTATCCCCACCTAGAAACATTACCCCATTGGCCCCAAAT TCAACAGGAAAAAATCCTCGTGGATGTGGTGCGATCGCCTAAGGAAATGCTCCTACAAATTTTCACCCAGCCCATTTTTA AAGAGCCGACATTTTTCTGGGAATTTATTGAACGCAAACAACAGGCCCAGGGGTTTGGCGAAGGGAATTTTCAAGCATTG TTTGAAGCCATTGAACAGGCCCAACGGCAACGGCTGGTTTCCCCTCGCCCCTAA
Upstream 100 bases:
>100_bases AAGACTTTCTCGAACGCTCCCAGCAATAACCCAAGCCATCGGTCAATCCTGAGAAAGTACGCTAAGTTGAATAGGAGCTG TTGTTTATCTTTCCCGACAC
Downstream 100 bases:
>100_bases ATGTCCGGCCAATAGAACTAAGCCGCTTCGGGATGTTCGATAATGCCGCCCCCCAGCACCCGATCACCGTCATAAAGTAC GGCCGCCTGACCAGGGGTAA
Product: glyoxalase family protein
Products: homogentisate; CO2
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MANQSPPNLAIAYVHFYVDDLDYWQTWFQTKFQLNITAPQATFPFLPENTIQLSSPELTLMLSAPQSPADPVAQYLTHHP CGVADVAFYIDQKAFFQPKNTDQSVTVLRNNVGFQHTLIYRDTVPRTNTQIDHLVLNVPVGKLQETVQWYEDKFGFNRQQ TFTIKTNYSGLASQVLSHPSGIQLPINQPGDCCENPETAQRSQIQEFIEFNRGAGIQHIALKYKNLPEQIGHFRRTNMAF LDVPATYYKNLYDRYPHLETLPHWPQIQQEKILVDVVRSPKEMLLQIFTQPIFKEPTFFWEFIERKQQAQGFGEGNFQAL FEAIEQAQRQRLVSPRP
Sequences:
>Translated_337_residues MANQSPPNLAIAYVHFYVDDLDYWQTWFQTKFQLNITAPQATFPFLPENTIQLSSPELTLMLSAPQSPADPVAQYLTHHP CGVADVAFYIDQKAFFQPKNTDQSVTVLRNNVGFQHTLIYRDTVPRTNTQIDHLVLNVPVGKLQETVQWYEDKFGFNRQQ TFTIKTNYSGLASQVLSHPSGIQLPINQPGDCCENPETAQRSQIQEFIEFNRGAGIQHIALKYKNLPEQIGHFRRTNMAF LDVPATYYKNLYDRYPHLETLPHWPQIQQEKILVDVVRSPKEMLLQIFTQPIFKEPTFFWEFIERKQQAQGFGEGNFQAL FEAIEQAQRQRLVSPRP >Mature_336_residues ANQSPPNLAIAYVHFYVDDLDYWQTWFQTKFQLNITAPQATFPFLPENTIQLSSPELTLMLSAPQSPADPVAQYLTHHPC GVADVAFYIDQKAFFQPKNTDQSVTVLRNNVGFQHTLIYRDTVPRTNTQIDHLVLNVPVGKLQETVQWYEDKFGFNRQQT FTIKTNYSGLASQVLSHPSGIQLPINQPGDCCENPETAQRSQIQEFIEFNRGAGIQHIALKYKNLPEQIGHFRRTNMAFL DVPATYYKNLYDRYPHLETLPHWPQIQQEKILVDVVRSPKEMLLQIFTQPIFKEPTFFWEFIERKQQAQGFGEGNFQALF EAIEQAQRQRLVSPRP
Specific function: Unknown
COG id: COG3185
COG function: function code ER; 4-hydroxyphenylpyruvate dioxygenase and related hemolysins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 4HPPD family [H]
Homologues:
Organism=Homo sapiens, GI285002264, Length=326, Percent_Identity=30.0613496932515, Blast_Score=139, Evalue=5e-33, Organism=Homo sapiens, GI4504477, Length=326, Percent_Identity=30.0613496932515, Blast_Score=139, Evalue=5e-33, Organism=Homo sapiens, GI14249394, Length=213, Percent_Identity=28.6384976525822, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555220, Length=216, Percent_Identity=37.5, Blast_Score=128, Evalue=5e-30, Organism=Caenorhabditis elegans, GI17550752, Length=209, Percent_Identity=31.1004784688995, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI21356105, Length=228, Percent_Identity=33.7719298245614, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI24667510, Length=207, Percent_Identity=34.7826086956522, Blast_Score=115, Evalue=6e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005956 - InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: 1.13.11.27
Molecular weight: Translated: 39021; Mature: 38889
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANQSPPNLAIAYVHFYVDDLDYWQTWFQTKFQLNITAPQATFPFLPENTIQLSSPELTL CCCCCCCCEEEEEEEEEECCHHHHHHHHCEEEEEEEECCCCCCCCCCCCCEEECCCCEEE MLSAPQSPADPVAQYLTHHPCGVADVAFYIDQKAFFQPKNTDQSVTVLRNNVGFQHTLIY EEECCCCCHHHHHHHHHCCCCCHHHHHHHHCHHHHCCCCCCCCCEEEEECCCCCEEEEEE RDTVPRTNTQIDHLVLNVPVGKLQETVQWYEDKFGFNRQQTFTIKTNYSGLASQVLSHPS ECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCC GIQLPINQPGDCCENPETAQRSQIQEFIEFNRGAGIQHIALKYKNLPEQIGHFRRTNMAF CCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCEEE LDVPATYYKNLYDRYPHLETLPHWPQIQQEKILVDVVRSPKEMLLQIFTQPIFKEPTFFW EECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHH EFIERKQQAQGFGEGNFQALFEAIEQAQRQRLVSPRP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ANQSPPNLAIAYVHFYVDDLDYWQTWFQTKFQLNITAPQATFPFLPENTIQLSSPELTL CCCCCCCEEEEEEEEEECCHHHHHHHHCEEEEEEEECCCCCCCCCCCCCEEECCCCEEE MLSAPQSPADPVAQYLTHHPCGVADVAFYIDQKAFFQPKNTDQSVTVLRNNVGFQHTLIY EEECCCCCHHHHHHHHHCCCCCHHHHHHHHCHHHHCCCCCCCCCEEEEECCCCCEEEEEE RDTVPRTNTQIDHLVLNVPVGKLQETVQWYEDKFGFNRQQTFTIKTNYSGLASQVLSHPS ECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCC GIQLPINQPGDCCENPETAQRSQIQEFIEFNRGAGIQHIALKYKNLPEQIGHFRRTNMAF CCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCEEE LDVPATYYKNLYDRYPHLETLPHWPQIQQEKILVDVVRSPKEMLLQIFTQPIFKEPTFFW EECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHH EFIERKQQAQGFGEGNFQALFEAIEQAQRQRLVSPRP HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 4-hydroxyphenylpyruvate; O2
Specific reaction: 4-hydroxyphenylpyruvate + O2 = homogentisate + CO2
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]