| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is infC
Identifier: 170079295
GI number: 170079295
Start: 2832402
End: 2832938
Strand: Reverse
Name: infC
Synonym: SYNPCC7002_A2702
Alternate gene names: 170079295
Gene position: 2832938-2832402 (Counterclockwise)
Preceding gene: 170079303
Following gene: 170079294
Centisome position: 94.18
GC content: 50.28
Gene sequence:
>537_bases GTGAAAGATAAAAGACGCGTAAAACGTGACCTCCCGAAAATTAACGAAAGAATTCGTTTTCCAAATATCAGAGTCATCAG TGGAGACGGGGAACAACTTGGCATCATGACCCCCGCCGAGGCCCTGGCGATCGCCGAAGAAGAAGACCTCGATCTTGTCC TCGTCAGCGAAACCGCCAAGCCGCCAGTATGCCGGATTATGGACTACGGGAAGTACAAATTCGAGCAGGAAAAACGCGCC CGAGAAGCCAAAAAGAAACAGCACAATGCGGATCTCAAAGAGGTCAAAATGCGTTACAAAATTGAGGAACATGACTACCA AGTCCGGGTAAACAGTGCCCAGCGCTTCCTCAAATCAGGCGACAAAGTCAAAGCAACGATCACCTTCCGGGGCCGGGAGA TCCAGCACTCCAACCTTGCCCAAAAACTGCTAGATCGCATGGCCAAAGACCTCGAAGAAGTCGGTGAAATTCAACAGCGA CCCAAACGAGAAGGGCGTAACATGATGATGATCCTCGCCCCGAAAAAATCTACCTAG
Upstream 100 bases:
>100_bases CGAAAAGTCCGCCAATGAGTAAAATGGGCATAGTTCTCAATTTTTTATTGACTGTAATAAACCTACCTACCAAATCGTAA CAACATTCAACGCATAGCCT
Downstream 100 bases:
>100_bases GCGCGATTGAGGCGGCCAACATGAAAATGTAGCTATTTATCGCTGGGGAGTCAGTTGTGCTTGCGGGCAAAAGCTACTCC CCAATGTTGTTTCTATAACG
Product: translation initiation factor IF-3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MKDKRRVKRDLPKINERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAKPPVCRIMDYGKYKFEQEKRA REAKKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQR PKREGRNMMMILAPKKST
Sequences:
>Translated_178_residues MKDKRRVKRDLPKINERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAKPPVCRIMDYGKYKFEQEKRA REAKKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQR PKREGRNMMMILAPKKST >Mature_178_residues MKDKRRVKRDLPKINERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAKPPVCRIMDYGKYKFEQEKRA REAKKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQR PKREGRNMMMILAPKKST
Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
COG id: COG0290
COG function: function code J; Translation initiation factor 3 (IF-3)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IF-3 family
Homologues:
Organism=Escherichia coli, GI1788012, Length=178, Percent_Identity=48.314606741573, Blast_Score=145, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): IF3_SYNP2 (B1XM04)
Other databases:
- EMBL: CP000951 - RefSeq: YP_001735933.1 - ProteinModelPortal: B1XM04 - SMR: B1XM04 - GeneID: 6056170 - GenomeReviews: CP000951_GR - KEGG: syp:SYNPCC7002_A2702 - HOGENOM: HBG744268 - OMA: FDRRAPV - ProtClustDB: PRK00028 - GO: GO:0005737 - HAMAP: MF_00080 - InterPro: IPR019813 - InterPro: IPR001288 - InterPro: IPR019815 - InterPro: IPR019814 - Gene3D: G3DSA:3.10.20.80 - Gene3D: G3DSA:3.30.110.10 - PANTHER: PTHR10938 - TIGRFAMs: TIGR00168
Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N; SSF54364 IF3; SSF55200 IF3
EC number: NA
Molecular weight: Translated: 20792; Mature: 20792
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: PS00938 IF3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDKRRVKRDLPKINERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAK CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHCCCCCCCCEEEEECCCC PPVCRIMDYGKYKFEQEKRAREAKKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSG CCCEEHECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCEEEEEHHHHHHHHCC DKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKST CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC >Mature Secondary Structure MKDKRRVKRDLPKINERIRFPNIRVISGDGEQLGIMTPAEALAIAEEEDLDLVLVSETAK CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHCCCCCCCCEEEEECCCC PPVCRIMDYGKYKFEQEKRAREAKKKQHNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSG CCCEEHECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCEEEEEHHHHHHHHCC DKVKATITFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKST CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA