| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170079189
Identifier: 170079189
GI number: 170079189
Start: 2716489
End: 2717508
Strand: Direct
Name: 170079189
Synonym: SYNPCC7002_A2595
Alternate gene names: NA
Gene position: 2716489-2717508 (Clockwise)
Preceding gene: 170079188
Following gene: 170079190
Centisome position: 90.31
GC content: 50.88
Gene sequence:
>1020_bases ATGAATTCTCAAGCCGTTCCATCTCCCAAGTGGTGGTTTCAGATCATCTTCCTCTCTCTGTTTTTGGGGGGACTCCAAAC AAAGCAAGCCTCCGCCCAAACCCCAGGATGCTTTACGACGAATGTCCCCTCTTCCCCTCTCAGCTACGATGTCACCAGCA CAACCCAAACCGAAAGCTACGCCGTGACATTTCGCTGTACCGATGATGGCACGACCGGAGGAAGCAACCTCAGCAATGTT GATCTAGATGTGACGCTACTGCCGCTCACTGCACCAACCGCTGGCCCGGCTAATCTGGATCTCGGTTCTCCGAATGGTGT TACTCATACGATTTCGATTGGTTCGGGTGGTTCCTTTACGAATCTGGTCGATACTCAAACCACCGTAAATAACAGTGGCT CAACCAATTTAGTCGTGTCAACTGCTGGTGGTAAAGGCGAAAATCTCTTCCTCGATGGTACCGGAACGATCACGGTGAAT ATCCAATCCCGCTTTGCACTCCAGGGGAGCACCTCCGAATTTGCCGCTGGCACCTACACCACCCAGTTTGAAGTTGATGT AACCCCAGTTGGTGGGGGCACCACTGCTGATGAAACTACCACAATCAGTAGTACGGTCAGCCCCAGTTGCGTCCTCGATA ATGTGATTCGCTTCCGGGAAACAGCCACCCCCTATATCAAAACAGGCAGTGAACCCAATGTTTCCCAGCTTCAAGCCAGC GATACAGCGAAGTTTGACTGTAATGCCACCACCGTCGATATCAACTTTAGTGCAGACAGCGCTACCTACACGCCGCCAAC AGGGGGGGCAACCAACCTGACCGCAACCCATCAATTCGCCTATGAACTCAATGGCAACGGCTTCAACAATTACAGTGGCC CAGAGCTTATTGAAAACCAAAATACAGATGACAATGGTGATGCAACCTTAACGATTCGCTCCACCTGGACGCCGAATAGT GATCAACTGTTCGCTTCAGAATACAACGCCCAAACCACTGTCACCATTACGGCTAAATAA
Upstream 100 bases:
>100_bases TTCTTTTCATTCTCAAATTATTTGTGCCTTTGCTCAATCTGTTCTCTTCGGCAGCTTCTAAAATATCAAGCAATAACGTC ATCGGATCACACTTCAGGTA
Downstream 100 bases:
>100_bases TACACACATAGGCAATTTGTAAGTAACCTTTCTCCGTAGATTGCTTCTAGGCCATCATCTTTATCTTTATCCATTACTTC TTTTCTTCCTTGTCCTATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MNSQAVPSPKWWFQIIFLSLFLGGLQTKQASAQTPGCFTTNVPSSPLSYDVTSTTQTESYAVTFRCTDDGTTGGSNLSNV DLDVTLLPLTAPTAGPANLDLGSPNGVTHTISIGSGGSFTNLVDTQTTVNNSGSTNLVVSTAGGKGENLFLDGTGTITVN IQSRFALQGSTSEFAAGTYTTQFEVDVTPVGGGTTADETTTISSTVSPSCVLDNVIRFRETATPYIKTGSEPNVSQLQAS DTAKFDCNATTVDINFSADSATYTPPTGGATNLTATHQFAYELNGNGFNNYSGPELIENQNTDDNGDATLTIRSTWTPNS DQLFASEYNAQTTVTITAK
Sequences:
>Translated_339_residues MNSQAVPSPKWWFQIIFLSLFLGGLQTKQASAQTPGCFTTNVPSSPLSYDVTSTTQTESYAVTFRCTDDGTTGGSNLSNV DLDVTLLPLTAPTAGPANLDLGSPNGVTHTISIGSGGSFTNLVDTQTTVNNSGSTNLVVSTAGGKGENLFLDGTGTITVN IQSRFALQGSTSEFAAGTYTTQFEVDVTPVGGGTTADETTTISSTVSPSCVLDNVIRFRETATPYIKTGSEPNVSQLQAS DTAKFDCNATTVDINFSADSATYTPPTGGATNLTATHQFAYELNGNGFNNYSGPELIENQNTDDNGDATLTIRSTWTPNS DQLFASEYNAQTTVTITAK >Mature_339_residues MNSQAVPSPKWWFQIIFLSLFLGGLQTKQASAQTPGCFTTNVPSSPLSYDVTSTTQTESYAVTFRCTDDGTTGGSNLSNV DLDVTLLPLTAPTAGPANLDLGSPNGVTHTISIGSGGSFTNLVDTQTTVNNSGSTNLVVSTAGGKGENLFLDGTGTITVN IQSRFALQGSTSEFAAGTYTTQFEVDVTPVGGGTTADETTTISSTVSPSCVLDNVIRFRETATPYIKTGSEPNVSQLQAS DTAKFDCNATTVDINFSADSATYTPPTGGATNLTATHQFAYELNGNGFNNYSGPELIENQNTDDNGDATLTIRSTWTPNS DQLFASEYNAQTTVTITAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35462; Mature: 35462
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSQAVPSPKWWFQIIFLSLFLGGLQTKQASAQTPGCFTTNVPSSPLSYDVTSTTQTESY CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCEE AVTFRCTDDGTTGGSNLSNVDLDVTLLPLTAPTAGPANLDLGSPNGVTHTISIGSGGSFT EEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCC NLVDTQTTVNNSGSTNLVVSTAGGKGENLFLDGTGTITVNIQSRFALQGSTSEFAAGTYT EEEECEEEECCCCCCEEEEEECCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCEEE TQFEVDVTPVGGGTTADETTTISSTVSPSCVLDNVIRFRETATPYIKTGSEPNVSQLQAS EEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHEECC DTAKFDCNATTVDINFSADSATYTPPTGGATNLTATHQFAYELNGNGFNNYSGPELIENQ CCCEEECCEEEEEEEECCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCC NTDDNGDATLTIRSTWTPNSDQLFASEYNAQTTVTITAK CCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEEEEC >Mature Secondary Structure MNSQAVPSPKWWFQIIFLSLFLGGLQTKQASAQTPGCFTTNVPSSPLSYDVTSTTQTESY CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCEE AVTFRCTDDGTTGGSNLSNVDLDVTLLPLTAPTAGPANLDLGSPNGVTHTISIGSGGSFT EEEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCC NLVDTQTTVNNSGSTNLVVSTAGGKGENLFLDGTGTITVNIQSRFALQGSTSEFAAGTYT EEEECEEEECCCCCCEEEEEECCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCEEE TQFEVDVTPVGGGTTADETTTISSTVSPSCVLDNVIRFRETATPYIKTGSEPNVSQLQAS EEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCHHHEECC DTAKFDCNATTVDINFSADSATYTPPTGGATNLTATHQFAYELNGNGFNNYSGPELIENQ CCCEEECCEEEEEEEECCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCC NTDDNGDATLTIRSTWTPNSDQLFASEYNAQTTVTITAK CCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA