| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is hemH
Identifier: 170079183
GI number: 170079183
Start: 2709800
End: 2710960
Strand: Direct
Name: hemH
Synonym: SYNPCC7002_A2589
Alternate gene names: 170079183
Gene position: 2709800-2710960 (Clockwise)
Preceding gene: 170079181
Following gene: 170079187
Centisome position: 90.09
GC content: 50.65
Gene sequence:
>1161_bases ATGGGTCGTGTTGGGGTCTTATTACTTAACCTAGGTGGGCCAGACAAATTAGAGGATGTCCGTCCTTTTTTATTTAATTT GTTTGCTGACCCCGAAATTATTCGTTTACCCGCGCCATGGATGCAAAAGCCGCTTGCTTGGCTCATTTCCACGCTCCGGG CCGGCAAATCCCAAGAAAACTATAAAGAAATTGGCGGTGGTTCGCCCCTCCGACAAATCACCGAAGCCCAGGGGACAGCC CTCGCCCAAAAGTTGGCGGAGTGGGGTCAAGAGGTCAAAGTTTATGTGGGGATGCGCTACTGGCACCCCTTCACCGAAGA GGCGATCGCCGAAATCAAAAAAGACGACCTTGATCAGCTTGTGGTATTGCCACTCTATCCCCAGTTTTCCATCAGCACTA GCGGGTCTAGCTTCCGGGTGCTCGAAGAAATGTGGCGCACCGACAAAGACCTCAATCAACTCGATTACACCCTCATTCCC TCCTGGTATGACCATCCCCAATACATTGCTGCGATGGTCGATCTCATTCGCCAAGAGCTGGATCAATTTGATAACCCAGA CCAGGCCCATATTTTCTTTAGTGCCCATGGCGTCCCCCAAAGCTATGTCGAAGAAGCAGGAGATCCCTACCAGCGAGAAA TCGAAGAATGCACCAAATTAATCATGGAAGCCCTTGGTCGTCCCAATGACTACACCCTGGCCTACCAAAGTCGTGTTGGC CCCGTAGAATGGCTCCAACCCTACACCGAAGATTCCCTCATTGCCCTGGGCGAAAAAGGCGTGAAGGATTTGGTGGTGAT TCCCATTAGTTTCGTGTCTGAGCACATCGAAACCCTCCAGGAAATCGATATTGAGTATCGGGAAGTTGCCGAGGAAGCTG GCATTGAAAATTTCCGCCGCGTTCCGGCTCTGAATACTCATCCATTGTTCATCGAATCCTTGGCGAACTTGGTCACCGAT TCCCTCGAACAATGTCCTCGCACCTTTGGTCAGGTCACCCACCCCAAAGAAAATATGAAAATGTATCCCCAAGAATTGTC CTGGGGCATGAATACCAGCGCCGAGGTCTTAAATGGCCGCCTCGCCATGATCGGCTTTTTGGCGTTGTTGTTGGAGTTGA TTAGTGGCCAAGGCCCGCTCCATTTTGTTGGCATTATGTAA
Upstream 100 bases:
>100_bases TCGACTTTCTTGTAGCCACCACGACAGGCACGCCGTCCCAAAGAGATATATTGTTACAATAACTTAAAGAAAATACCAGT AAATTTAATTTGTATCAGCT
Downstream 100 bases:
>100_bases ATAACATCCCCCTAGCTCCCCCTTCGGAAGTGACATCCCCCTAGCTCCCCCTTTCAAAGGGGGATTTTTGTTAAATGACG CGCTCGTTGCCGCCATCAAG
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MGRVGVLLLNLGGPDKLEDVRPFLFNLFADPEIIRLPAPWMQKPLAWLISTLRAGKSQENYKEIGGGSPLRQITEAQGTA LAQKLAEWGQEVKVYVGMRYWHPFTEEAIAEIKKDDLDQLVVLPLYPQFSISTSGSSFRVLEEMWRTDKDLNQLDYTLIP SWYDHPQYIAAMVDLIRQELDQFDNPDQAHIFFSAHGVPQSYVEEAGDPYQREIEECTKLIMEALGRPNDYTLAYQSRVG PVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRRVPALNTHPLFIESLANLVTD SLEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGRLAMIGFLALLLELISGQGPLHFVGIM
Sequences:
>Translated_386_residues MGRVGVLLLNLGGPDKLEDVRPFLFNLFADPEIIRLPAPWMQKPLAWLISTLRAGKSQENYKEIGGGSPLRQITEAQGTA LAQKLAEWGQEVKVYVGMRYWHPFTEEAIAEIKKDDLDQLVVLPLYPQFSISTSGSSFRVLEEMWRTDKDLNQLDYTLIP SWYDHPQYIAAMVDLIRQELDQFDNPDQAHIFFSAHGVPQSYVEEAGDPYQREIEECTKLIMEALGRPNDYTLAYQSRVG PVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRRVPALNTHPLFIESLANLVTD SLEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGRLAMIGFLALLLELISGQGPLHFVGIM >Mature_385_residues GRVGVLLLNLGGPDKLEDVRPFLFNLFADPEIIRLPAPWMQKPLAWLISTLRAGKSQENYKEIGGGSPLRQITEAQGTAL AQKLAEWGQEVKVYVGMRYWHPFTEEAIAEIKKDDLDQLVVLPLYPQFSISTSGSSFRVLEEMWRTDKDLNQLDYTLIPS WYDHPQYIAAMVDLIRQELDQFDNPDQAHIFFSAHGVPQSYVEEAGDPYQREIEECTKLIMEALGRPNDYTLAYQSRVGP VEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRRVPALNTHPLFIESLANLVTDS LEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGRLAMIGFLALLLELISGQGPLHFVGIM
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499021, Length=327, Percent_Identity=41.2844036697248, Blast_Score=237, Evalue=1e-62, Organism=Homo sapiens, GI60499025, Length=327, Percent_Identity=41.2844036697248, Blast_Score=237, Evalue=1e-62, Organism=Escherichia coli, GI1786681, Length=322, Percent_Identity=35.4037267080745, Blast_Score=158, Evalue=5e-40, Organism=Saccharomyces cerevisiae, GI6324750, Length=328, Percent_Identity=37.8048780487805, Blast_Score=201, Evalue=2e-52, Organism=Drosophila melanogaster, GI17864156, Length=327, Percent_Identity=40.0611620795107, Blast_Score=248, Evalue=4e-66, Organism=Drosophila melanogaster, GI24651774, Length=256, Percent_Identity=37.5, Blast_Score=176, Evalue=2e-44, Organism=Drosophila melanogaster, GI45552018, Length=193, Percent_Identity=39.8963730569948, Blast_Score=145, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_SYNP2 (B1XL79)
Other databases:
- EMBL: CP000951 - RefSeq: YP_001735821.1 - ProteinModelPortal: B1XL79 - SMR: B1XL79 - GeneID: 6056609 - GenomeReviews: CP000951_GR - KEGG: syp:SYNPCC7002_A2589 - HOGENOM: HBG697135 - OMA: WLQKPLA - ProtClustDB: PRK00035 - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 43796; Mature: 43664
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVGVLLLNLGGPDKLEDVRPFLFNLFADPEIIRLPAPWMQKPLAWLISTLRAGKSQEN CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHH YKEIGGGSPLRQITEAQGTALAQKLAEWGQEVKVYVGMRYWHPFTEEAIAEIKKDDLDQL HHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHCCCCHHHHHHHHHHCCCCCE VVLPLYPQFSISTSGSSFRVLEEMWRTDKDLNQLDYTLIPSWYDHPQYIAAMVDLIRQEL EEEECCCCCEECCCCCHHHHHHHHHCCCCCHHHCCCEECCCCCCCHHHHHHHHHHHHHHH DQFDNPDQAHIFFSAHGVPQSYVEEAGDPYQREIEECTKLIMEALGRPNDYTLAYQSRVG HHCCCCCCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC PVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRR CHHHHCCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHH VPALNTHPLFIESLANLVTDSLEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHCCCCCCHHHHHCCH LAMIGFLALLLELISGQGPLHFVGIM HHHHHHHHHHHHHHCCCCCEEEEECC >Mature Secondary Structure GRVGVLLLNLGGPDKLEDVRPFLFNLFADPEIIRLPAPWMQKPLAWLISTLRAGKSQEN CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHH YKEIGGGSPLRQITEAQGTALAQKLAEWGQEVKVYVGMRYWHPFTEEAIAEIKKDDLDQL HHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHEEEEEEEHHCCCCHHHHHHHHHHCCCCCE VVLPLYPQFSISTSGSSFRVLEEMWRTDKDLNQLDYTLIPSWYDHPQYIAAMVDLIRQEL EEEECCCCCEECCCCCHHHHHHHHHCCCCCHHHCCCEECCCCCCCHHHHHHHHHHHHHHH DQFDNPDQAHIFFSAHGVPQSYVEEAGDPYQREIEECTKLIMEALGRPNDYTLAYQSRVG HHCCCCCCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC PVEWLQPYTEDSLIALGEKGVKDLVVIPISFVSEHIETLQEIDIEYREVAEEAGIENFRR CHHHHCCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHH VPALNTHPLFIESLANLVTDSLEQCPRTFGQVTHPKENMKMYPQELSWGMNTSAEVLNGR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHHHCCCCCCHHHHHCCH LAMIGFLALLLELISGQGPLHFVGIM HHHHHHHHHHHHHHCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA