Click here to switch to the map view.

The map label for this gene is rtcB [H]

Identifier: 170079110

GI number: 170079110

Start: 2625373

End: 2626554

Strand: Direct

Name: rtcB [H]

Synonym: SYNPCC7002_A2515

Alternate gene names: 170079110

Gene position: 2625373-2626554 (Clockwise)

Preceding gene: 170079108

Following gene: 170079115

Centisome position: 87.28

GC content: 49.41

Gene sequence:

>1182_bases
ATGCCCCACCAACCCCTACCGATCCAAACCGAAAAACCCGTTTATTCTTGGGCTGGCCATGATTTAGCCTCCCAGGAACT
GCAAATGGCGAAAAATGTGGCCTCGCTGCCGTTTGTGTTTAAACACGTTTCCCTGATGCCCGACGTTCACCTGGGGAAAG
GAGCCTTGGTGGGTTCTGTCATTGCCACAAAAGATGCCATCATTCCTGCGGCGGTGGGGGTCGATATTGGCTGTGGAATG
GCCGCCCTCAAATTGCCCTTTAAAGGCGATCGCCTCGACGGCAAACTCAAGCAAATCCGCAAAGACCTCGAAGCCATTAT
TCCCGTTGGTTTTGAAGAAAACAAAGACGTTGATAAAACGGTGAGTAATTGGGGTGGTTGGCAAAACTTTAAAGATCTCC
ATCGGGGCGTGAAAAACCTCGAAAGCAAAGCCCTGAAGCAAATGGGTTCCCTCGGTGGCGGCAATCATTTCATTGAGGTG
TGCTTGGATGAAGAAAATAATGTGTGGTTAATGCTCCACTCCGGTTCCCGTCACATTGGCAACAAACTTGCCCAATGTCA
CATTGGTACCGCCAAGGATCTTCTGAAACTCGTGGAAACTAAAGTACCAGATCCCGATCTCGCTTATTTCGTGAAAGGTA
CGCCGGAATTTGAAGCTTATTGGCGCGATCTCCAATGGGCTCAAAATTATGCTCATTTCAATCGCGATGTGATGCTGGCG
CGGTTTAAAAAGGTCATCGAAAAACATCTCGCTGGTGGCAAACCAACAAAAGCCTTGATGGTTGTGAATTGTCACCACAA
CTATGCCGAACAAGAAACCCATTTTGACGAAGAGATTTACGTCACCCGTAAAGGGGCAGTGCGGGCACGCCAGGAAGACT
ACGGTATTATTCCCGGTTCCATGGGCGCAAAATCCTACATCGTTAAGGGCAAAGGCAATGTGATGAGCTATTGTTCCTGT
AGCCACGGTGCGGGACGTTTAATGTCGCGGGCCAAAGCCAAAAAAACCTTTACCTTAGATGACTTGGTGGCCCAAACGGC
TGGGGTTGAATGTCGCAAAGATACTGGCATCATCGACGAAATTCCCGCCGCCTACAAACCCATCGAACAAGTGATGGCGC
AACAGGCAGATTTAGTGGAAGTGGTCGCCACCCTGAAACAAGTGCTTTGCATCAAGGGCTAG

Upstream 100 bases:

>100_bases
TATTTATGCTTGGATACGCAGTCGTTATGATCTGAAGGAGTGACAAATAACCCAATCTTTTTTGAATCACCTCATTTTTA
CTGCTGTTCCGTAGCCCCCG

Downstream 100 bases:

>100_bases
TGGAAAGGGGACATCGGAAACTGACTGAGGTAGTCCGACGCGACGATCATCGAGCCAATGCCATCGTTGGTAAAGATTTC
GAGCAACAGAGCATGGGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MPHQPLPIQTEKPVYSWAGHDLASQELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSVIATKDAIIPAAVGVDIGCGM
AALKLPFKGDRLDGKLKQIRKDLEAIIPVGFEENKDVDKTVSNWGGWQNFKDLHRGVKNLESKALKQMGSLGGGNHFIEV
CLDEENNVWLMLHSGSRHIGNKLAQCHIGTAKDLLKLVETKVPDPDLAYFVKGTPEFEAYWRDLQWAQNYAHFNRDVMLA
RFKKVIEKHLAGGKPTKALMVVNCHHNYAEQETHFDEEIYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNVMSYCSC
SHGAGRLMSRAKAKKTFTLDDLVAQTAGVECRKDTGIIDEIPAAYKPIEQVMAQQADLVEVVATLKQVLCIKG

Sequences:

>Translated_393_residues
MPHQPLPIQTEKPVYSWAGHDLASQELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSVIATKDAIIPAAVGVDIGCGM
AALKLPFKGDRLDGKLKQIRKDLEAIIPVGFEENKDVDKTVSNWGGWQNFKDLHRGVKNLESKALKQMGSLGGGNHFIEV
CLDEENNVWLMLHSGSRHIGNKLAQCHIGTAKDLLKLVETKVPDPDLAYFVKGTPEFEAYWRDLQWAQNYAHFNRDVMLA
RFKKVIEKHLAGGKPTKALMVVNCHHNYAEQETHFDEEIYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNVMSYCSC
SHGAGRLMSRAKAKKTFTLDDLVAQTAGVECRKDTGIIDEIPAAYKPIEQVMAQQADLVEVVATLKQVLCIKG
>Mature_392_residues
PHQPLPIQTEKPVYSWAGHDLASQELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSVIATKDAIIPAAVGVDIGCGMA
ALKLPFKGDRLDGKLKQIRKDLEAIIPVGFEENKDVDKTVSNWGGWQNFKDLHRGVKNLESKALKQMGSLGGGNHFIEVC
LDEENNVWLMLHSGSRHIGNKLAQCHIGTAKDLLKLVETKVPDPDLAYFVKGTPEFEAYWRDLQWAQNYAHFNRDVMLAR
FKKVIEKHLAGGKPTKALMVVNCHHNYAEQETHFDEEIYVTRKGAVRARQEDYGIIPGSMGAKSYIVKGKGNVMSYCSCS
HGAGRLMSRAKAKKTFTLDDLVAQTAGVECRKDTGIIDEIPAAYKPIEQVMAQQADLVEVVATLKQVLCIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=435, Percent_Identity=26.2068965517241, Blast_Score=119, Evalue=4e-27,
Organism=Escherichia coli, GI2367224, Length=401, Percent_Identity=48.8778054862843, Blast_Score=384, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17506665, Length=435, Percent_Identity=26.8965517241379, Blast_Score=131, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24585217, Length=435, Percent_Identity=23.9080459770115, Blast_Score=102, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43383; Mature: 43251

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHQPLPIQTEKPVYSWAGHDLASQELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSV
CCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IATKDAIIPAAVGVDIGCGMAALKLPFKGDRLDGKLKQIRKDLEAIIPVGFEENKDVDKT
HHHHCCHHHHHHCCCCCCCHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
VSNWGGWQNFKDLHRGVKNLESKALKQMGSLGGGNHFIEVCLDEENNVWLMLHSGSRHIG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCHHHH
NKLAQCHIGTAKDLLKLVETKVPDPDLAYFVKGTPEFEAYWRDLQWAQNYAHFNRDVMLA
HHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHH
RFKKVIEKHLAGGKPTKALMVVNCHHNYAEQETHFDEEIYVTRKGAVRARQEDYGIIPGS
HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCC
MGAKSYIVKGKGNVMSYCSCSHGAGRLMSRAKAKKTFTLDDLVAQTAGVECRKDTGIIDE
CCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHH
IPAAYKPIEQVMAQQADLVEVVATLKQVLCIKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PHQPLPIQTEKPVYSWAGHDLASQELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSV
CCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IATKDAIIPAAVGVDIGCGMAALKLPFKGDRLDGKLKQIRKDLEAIIPVGFEENKDVDKT
HHHHCCHHHHHHCCCCCCCHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
VSNWGGWQNFKDLHRGVKNLESKALKQMGSLGGGNHFIEVCLDEENNVWLMLHSGSRHIG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEECCCHHHH
NKLAQCHIGTAKDLLKLVETKVPDPDLAYFVKGTPEFEAYWRDLQWAQNYAHFNRDVMLA
HHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHH
RFKKVIEKHLAGGKPTKALMVVNCHHNYAEQETHFDEEIYVTRKGAVRARQEDYGIIPGS
HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHCCCCEEEEEECCCHHCCCCCCCCCCCC
MGAKSYIVKGKGNVMSYCSCSHGAGRLMSRAKAKKTFTLDDLVAQTAGVECRKDTGIIDE
CCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHH
IPAAYKPIEQVMAQQADLVEVVATLKQVLCIKG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]