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The map label for this gene is yjcF [C]

Identifier: 170079109

GI number: 170079109

Start: 2623638

End: 2625179

Strand: Reverse

Name: yjcF [C]

Synonym: SYNPCC7002_A2514

Alternate gene names: 170079109

Gene position: 2625179-2623638 (Counterclockwise)

Preceding gene: 170079111

Following gene: 170079107

Centisome position: 87.27

GC content: 49.68

Gene sequence:

>1542_bases
ATGAATTATTACGAGATTTTGGGGATTCAGATTACGGCTAACCAACGGGAAATTAAAACGGCCTACCGACGCAAGGCGAT
CGCCCTCCACCCAGACACCCTGACGATCAATACCCCCGCCGACCAACGGAAACAAGCGGAGGAAGACTTTAAGGAACTCA
ATCAGATTTACGAAATTTTATCTAATCCAGAACAGCGGCAAAAATATAACCAAGACCTCCAAGGCACTGAAAAAGCAGAT
CGATTGCAAAAAATTCGAGAACTCCGGGATCAACAAAATTTCCAGGCGGCGATCGCCCAGGCCCAGAGTCTCTACGGGCA
ATTTCCCACCGATCCCCAATGCGCCGATCTTTATGGCGAAGTTTTAATGCTCTACAGTCGCCAGTTGCTCGACAACAATC
CGGTGGCGATCGCCCCAGAAATCAAAACCTATCTGGAATTAGCCCTATCGGTGGTGCACTCACACCGTATCAAACAGCAG
ATCCAACAACTTCTTGCTCACTTTGAAAAAACAGCCAAACAAAAAAAGACGACCCAACAGGCATCCAATAGTGAAGCGCC
CCAGGAGTCATCTAACCTGATCAGCACCAAGCGCGCGATCCAACTCCTCAAAGCCGGGGAAGCTGGCATCAAAGCCTGGA
ACCAATTCCGGGAATATGAAACCTATTTACCCGACCTCGCCGGTGCTGATTTGAGCGGCATGGATCTCAGTCAGACCAAT
TTGCAGGGGGTGAATTTACGAGGGGCCGACCTGAGTCAGGCGAACCTAGGAGGCACAAATTTAAGTCAGGCCCAACTGAT
GCAAGCAAATTTAACAGGTATCAACGGTGAGTTGGCTAACTTTAGCCAAGCAGATCTGACAGAAGCTAACTTAACGGATA
GCTGTCTAGTGAACGCTGATTTCAACCAAGCCAATTTAACCGCGGCAACTCTGAATCAAGCCAATGCTTACCGCGCCAAT
TTCCAGGGGGCAAATCTCCAGAATGTGCACTGGTGCGGGGGAAATCTGGGAGAAACCAACTGTCTCCAGGCGAGCTTTGC
GGGAGCGATCCTCAACCAAACCAACGGCAAAAAAGGCAACTTTACAGCAACGACATTTACCAACAGTCAGTGGGAAGGGG
CGGTGTTGGTAGATGCGGACTTTTCCCAGGGGAATCTGGAGCGAATGGAGTTGGCCAATGCCAATTTGTCGAACGTTAAA
TTTATCGGCGCGCGGCTCTGCGGCACGAACCTCAATGGCAGCGCCACCCAAGGCAGCAAAAAATATCCCTATTACCAGGG
CAGCATTGATTTTTCTGGGGCAGATTTGTCCTGTGCCACCTGCATCGAAACGGTTTTTCCCAAGTCAAATTTCAGCAATA
CCCGCCTGCAAAATACCAATTTCGACCAGGCAGACCTCAGTGGCAGTAATTTCCAGGATGCGGTACTCCACAACACCAGC
TTTCTGGGGAGTAACCTACGCGAAACCGATCTCAGTGGCACAAAGTTTTATTTTGCCTACGTGAACGCTCAGACGAAAAT
TACCGGGGCGAAGGGCATTTAA

Upstream 100 bases:

>100_bases
ATAAATATTTTTAACGTTTAGTTGATAAATCACGGCACCCTTGCGACGGGTTAAAGGGTGGGCACTAGGATAGAAAATCA
TCGGTCGCAGCAGGGCACTT

Downstream 100 bases:

>100_bases
CCAGGGGAGCCATAGCCACCCCCCCCAGGGGTCTGGATTTCTAGGCGATCGCCTTTTTCCATCGCCACTTCAACGGTACT
GGGCAATATTGTTTCAGTGC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNYYEILGIQITANQREIKTAYRRKAIALHPDTLTINTPADQRKQAEEDFKELNQIYEILSNPEQRQKYNQDLQGTEKAD
RLQKIRELRDQQNFQAAIAQAQSLYGQFPTDPQCADLYGEVLMLYSRQLLDNNPVAIAPEIKTYLELALSVVHSHRIKQQ
IQQLLAHFEKTAKQKKTTQQASNSEAPQESSNLISTKRAIQLLKAGEAGIKAWNQFREYETYLPDLAGADLSGMDLSQTN
LQGVNLRGADLSQANLGGTNLSQAQLMQANLTGINGELANFSQADLTEANLTDSCLVNADFNQANLTAATLNQANAYRAN
FQGANLQNVHWCGGNLGETNCLQASFAGAILNQTNGKKGNFTATTFTNSQWEGAVLVDADFSQGNLERMELANANLSNVK
FIGARLCGTNLNGSATQGSKKYPYYQGSIDFSGADLSCATCIETVFPKSNFSNTRLQNTNFDQADLSGSNFQDAVLHNTS
FLGSNLRETDLSGTKFYFAYVNAQTKITGAKGI

Sequences:

>Translated_513_residues
MNYYEILGIQITANQREIKTAYRRKAIALHPDTLTINTPADQRKQAEEDFKELNQIYEILSNPEQRQKYNQDLQGTEKAD
RLQKIRELRDQQNFQAAIAQAQSLYGQFPTDPQCADLYGEVLMLYSRQLLDNNPVAIAPEIKTYLELALSVVHSHRIKQQ
IQQLLAHFEKTAKQKKTTQQASNSEAPQESSNLISTKRAIQLLKAGEAGIKAWNQFREYETYLPDLAGADLSGMDLSQTN
LQGVNLRGADLSQANLGGTNLSQAQLMQANLTGINGELANFSQADLTEANLTDSCLVNADFNQANLTAATLNQANAYRAN
FQGANLQNVHWCGGNLGETNCLQASFAGAILNQTNGKKGNFTATTFTNSQWEGAVLVDADFSQGNLERMELANANLSNVK
FIGARLCGTNLNGSATQGSKKYPYYQGSIDFSGADLSCATCIETVFPKSNFSNTRLQNTNFDQADLSGSNFQDAVLHNTS
FLGSNLRETDLSGTKFYFAYVNAQTKITGAKGI
>Mature_513_residues
MNYYEILGIQITANQREIKTAYRRKAIALHPDTLTINTPADQRKQAEEDFKELNQIYEILSNPEQRQKYNQDLQGTEKAD
RLQKIRELRDQQNFQAAIAQAQSLYGQFPTDPQCADLYGEVLMLYSRQLLDNNPVAIAPEIKTYLELALSVVHSHRIKQQ
IQQLLAHFEKTAKQKKTTQQASNSEAPQESSNLISTKRAIQLLKAGEAGIKAWNQFREYETYLPDLAGADLSGMDLSQTN
LQGVNLRGADLSQANLGGTNLSQAQLMQANLTGINGELANFSQADLTEANLTDSCLVNADFNQANLTAATLNQANAYRAN
FQGANLQNVHWCGGNLGETNCLQASFAGAILNQTNGKKGNFTATTFTNSQWEGAVLVDADFSQGNLERMELANANLSNVK
FIGARLCGTNLNGSATQGSKKYPYYQGSIDFSGADLSCATCIETVFPKSNFSNTRLQNTNFDQADLSGSNFQDAVLHNTS
FLGSNLRETDLSGTKFYFAYVNAQTKITGAKGI

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Escherichia coli, GI1790502, Length=237, Percent_Identity=27.0042194092827, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1786197, Length=70, Percent_Identity=42.8571428571429, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584630, Length=81, Percent_Identity=44.4444444444444, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17648033, Length=81, Percent_Identity=44.4444444444444, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 56461; Mature: 56461

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYYEILGIQITANQREIKTAYRRKAIALHPDTLTINTPADQRKQAEEDFKELNQIYEIL
CCCEEEEEEEEECCHHHHHHHHHHCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
SNPEQRQKYNQDLQGTEKADRLQKIRELRDQQNFQAAIAQAQSLYGQFPTDPQCADLYGE
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VLMLYSRQLLDNNPVAIAPEIKTYLELALSVVHSHRIKQQIQQLLAHFEKTAKQKKTTQQ
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASNSEAPQESSNLISTKRAIQLLKAGEAGIKAWNQFREYETYLPDLAGADLSGMDLSQTN
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LQGVNLRGADLSQANLGGTNLSQAQLMQANLTGINGELANFSQADLTEANLTDSCLVNAD
CCCCEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
FNQANLTAATLNQANAYRANFQGANLQNVHWCGGNLGETNCLQASFAGAILNQTNGKKGN
CCCCCEEHHHHCCCCCEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC
FTATTFTNSQWEGAVLVDADFSQGNLERMELANANLSNVKFIGARLCGTNLNGSATQGSK
EEEEEEECCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEHEEECCCCCCCCCCCCC
KYPYYQGSIDFSGADLSCATCIETVFPKSNFSNTRLQNTNFDQADLSGSNFQDAVLHNTS
CCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHCCH
FLGSNLRETDLSGTKFYFAYVNAQTKITGAKGI
HHCCCCCCCCCCCCEEEEEEEECEEEECCCCCC
>Mature Secondary Structure
MNYYEILGIQITANQREIKTAYRRKAIALHPDTLTINTPADQRKQAEEDFKELNQIYEIL
CCCEEEEEEEEECCHHHHHHHHHHCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
SNPEQRQKYNQDLQGTEKADRLQKIRELRDQQNFQAAIAQAQSLYGQFPTDPQCADLYGE
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VLMLYSRQLLDNNPVAIAPEIKTYLELALSVVHSHRIKQQIQQLLAHFEKTAKQKKTTQQ
HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASNSEAPQESSNLISTKRAIQLLKAGEAGIKAWNQFREYETYLPDLAGADLSGMDLSQTN
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LQGVNLRGADLSQANLGGTNLSQAQLMQANLTGINGELANFSQADLTEANLTDSCLVNAD
CCCCEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
FNQANLTAATLNQANAYRANFQGANLQNVHWCGGNLGETNCLQASFAGAILNQTNGKKGN
CCCCCEEHHHHCCCCCEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC
FTATTFTNSQWEGAVLVDADFSQGNLERMELANANLSNVKFIGARLCGTNLNGSATQGSK
EEEEEEECCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEHEEECCCCCCCCCCCCC
KYPYYQGSIDFSGADLSCATCIETVFPKSNFSNTRLQNTNFDQADLSGSNFQDAVLHNTS
CCCEEECCEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHCCH
FLGSNLRETDLSGTKFYFAYVNAQTKITGAKGI
HHCCCCCCCCCCCCEEEEEEEECEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA