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The map label for this gene is yciR [C]

Identifier: 170079072

GI number: 170079072

Start: 2581216

End: 2582886

Strand: Direct

Name: yciR [C]

Synonym: SYNPCC7002_A2477

Alternate gene names: 170079072

Gene position: 2581216-2582886 (Clockwise)

Preceding gene: 170079071

Following gene: 170079073

Centisome position: 85.81

GC content: 52.54

Gene sequence:

>1671_bases
ATGAATTATCGGCAACGTCTCACTATTTTCTATGGATTTGCCCTATTGTTTGTGGGGGGGCTAGTGAGTGCCCTGGTGGG
TCAGCAGGCGATTGTCAGCAATAAAACCGCCGCCGCCGAACATCTAGGGGACATTAATCGTCAGTTTGCGAGTCTGCTAG
ATCTGCGGATGTGGGCAAGGCTCAATGAAGTCAAAACCCTCGCGGTGATTCCTGTATTTGGCGATCGCCAACGGGATCCT
GAAGCCAGACGGCTCTTGGAACAAGCCCAAGAATTCGTACCCATGTTTACCTGGATCGGCTTTCTCGATCCCCAGGGAAC
CGTCAGCATTGCCACCGACCGAATCCTCGAAGGCCAGTCCATTGCCAGCCGCCCAGTTTTTCAGGAGGGCCGCCAAGGAG
AATTTATCGGGGATGTCCATGACGCAGTGTTATTGGCCAATAAATTTCCCCTGCTTCCCAACGGAGAACCAATTCAATTT
GTCGATATTGCAATACCAGTCGAGAGCATTGATGGGGTGTTCCAGGGAGTCCTCGCCGCCCACTTAAGCTGGGAATGGGC
CGATAATACCCAGTCAACTTTAATGGAGCCCATTGCTGGGGAAAGGCAAAAAGAACTCTTCATCATTTCTGCTGAGGGAA
ATAAACTGCTTGGCCCAGAGGAATGGAGTGATGGAACATTGATGGGTTTTTTGCCCCTTGAGGAGCTCGCCCCAGGTGAA
TCCCGTTCCCTCGTGTTGCGTTGGCCCGGCGGCACCCGTTATTTAACGGATATTCGTCGCACCCAAGGTTATCAAAATTA
CCCTGGTTTAGGCTGGTTTACGGTAGCCAGACAACCAGAGGCGATCGCCCTCGCCCCGGCCCGCAGCTTAGCCCGCAATA
TCTGGGTTTATTCCTTGCTGATTGGTAGTTTATCCATTGTGGGGATTTGGTATTTATCCGGTTGGCTGAGTCGTCCTTTG
CGCCGTCTGAGTCGCATGAGCCAGCAGGCATGGTCTACACCAGAAACGCCTATTTCTTCTCGGTATCGTGCCCCAGATGA
GATCCAGACCGTAGAGCAAACCATCCGCCACCTCCAGTACGAAGGCGAACAACAAAAAAAAGCCCGGCAGTTGGCAGAAC
AAGCCTCCCGCCGTGACCCCCTCACAGGTCTTACCAATCGTGAAGGTTTACGGTTGTTTCTCGCGGATTATCCAGAAGGG
GCGATTCCCAATGATCAAGCCCTGGCAGTGCTGGCCCTCGATCTTGATGGGTTTAAGCAGGTCAATGATCACCACGGCCA
CGGCGTGGGGGATGAGCTTTTAAAAGCGGTGGCCAATCGGTTGCGTATGGAATTGCGGGTTGGCCAAGCCGGAGTTCGAC
TTGGGGGCGATGAGTTTTTATTGTTATTGCCTCTGCCCATGGCGCAAGCTGAAAATATTGCGAGGATCATTGCCCAAAAA
GTTTTATTCGCCCTGACCCAGCCCTTTGAACTGAGTCACCATACCGTCGAAATTGGCACGAGCATCGGTTTAGCAATCTG
GCCCATTGACCATGAAGATGTGTTGCTGGTTTTAGACTTCGCGGATAAAGCCCTTTATCAAGCTAAACAAGCTGGCAAGC
GCCGCTACATCCGTTGGAAGCCGTGTGAACTACCCCGCCGCAAGCAGCGAGGCTTCCTACCCAAAGAATAG

Upstream 100 bases:

>100_bases
AAAACAAGTAAACCTTGATTTCTATCTTTGGTGTCCCTAGGCTAAACAACAGCATCCACTAGCATTATCATTTAGGGTGC
ATTGATCGCTTTGCCACGAG

Downstream 100 bases:

>100_bases
CTTTCTATTCCGAGGAATAGCGAGTCTTATATTCTGGCGATAGGCGGACTCCCCGGTTCCCGGGGACAAAAATCACGGTT
ACAAAAAATACTTTGTATGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MNYRQRLTIFYGFALLFVGGLVSALVGQQAIVSNKTAAAEHLGDINRQFASLLDLRMWARLNEVKTLAVIPVFGDRQRDP
EARRLLEQAQEFVPMFTWIGFLDPQGTVSIATDRILEGQSIASRPVFQEGRQGEFIGDVHDAVLLANKFPLLPNGEPIQF
VDIAIPVESIDGVFQGVLAAHLSWEWADNTQSTLMEPIAGERQKELFIISAEGNKLLGPEEWSDGTLMGFLPLEELAPGE
SRSLVLRWPGGTRYLTDIRRTQGYQNYPGLGWFTVARQPEAIALAPARSLARNIWVYSLLIGSLSIVGIWYLSGWLSRPL
RRLSRMSQQAWSTPETPISSRYRAPDEIQTVEQTIRHLQYEGEQQKKARQLAEQASRRDPLTGLTNREGLRLFLADYPEG
AIPNDQALAVLALDLDGFKQVNDHHGHGVGDELLKAVANRLRMELRVGQAGVRLGGDEFLLLLPLPMAQAENIARIIAQK
VLFALTQPFELSHHTVEIGTSIGLAIWPIDHEDVLLVLDFADKALYQAKQAGKRRYIRWKPCELPRRKQRGFLPKE

Sequences:

>Translated_556_residues
MNYRQRLTIFYGFALLFVGGLVSALVGQQAIVSNKTAAAEHLGDINRQFASLLDLRMWARLNEVKTLAVIPVFGDRQRDP
EARRLLEQAQEFVPMFTWIGFLDPQGTVSIATDRILEGQSIASRPVFQEGRQGEFIGDVHDAVLLANKFPLLPNGEPIQF
VDIAIPVESIDGVFQGVLAAHLSWEWADNTQSTLMEPIAGERQKELFIISAEGNKLLGPEEWSDGTLMGFLPLEELAPGE
SRSLVLRWPGGTRYLTDIRRTQGYQNYPGLGWFTVARQPEAIALAPARSLARNIWVYSLLIGSLSIVGIWYLSGWLSRPL
RRLSRMSQQAWSTPETPISSRYRAPDEIQTVEQTIRHLQYEGEQQKKARQLAEQASRRDPLTGLTNREGLRLFLADYPEG
AIPNDQALAVLALDLDGFKQVNDHHGHGVGDELLKAVANRLRMELRVGQAGVRLGGDEFLLLLPLPMAQAENIARIIAQK
VLFALTQPFELSHHTVEIGTSIGLAIWPIDHEDVLLVLDFADKALYQAKQAGKRRYIRWKPCELPRRKQRGFLPKE
>Mature_556_residues
MNYRQRLTIFYGFALLFVGGLVSALVGQQAIVSNKTAAAEHLGDINRQFASLLDLRMWARLNEVKTLAVIPVFGDRQRDP
EARRLLEQAQEFVPMFTWIGFLDPQGTVSIATDRILEGQSIASRPVFQEGRQGEFIGDVHDAVLLANKFPLLPNGEPIQF
VDIAIPVESIDGVFQGVLAAHLSWEWADNTQSTLMEPIAGERQKELFIISAEGNKLLGPEEWSDGTLMGFLPLEELAPGE
SRSLVLRWPGGTRYLTDIRRTQGYQNYPGLGWFTVARQPEAIALAPARSLARNIWVYSLLIGSLSIVGIWYLSGWLSRPL
RRLSRMSQQAWSTPETPISSRYRAPDEIQTVEQTIRHLQYEGEQQKKARQLAEQASRRDPLTGLTNREGLRLFLADYPEG
AIPNDQALAVLALDLDGFKQVNDHHGHGVGDELLKAVANRLRMELRVGQAGVRLGGDEFLLLLPLPMAQAENIARIIAQK
VLFALTQPFELSHHTVEIGTSIGLAIWPIDHEDVLLVLDFADKALYQAKQAGKRRYIRWKPCELPRRKQRGFLPKE

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=31.4606741573034, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788381, Length=195, Percent_Identity=32.8205128205128, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=34.6368715083799, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=32.2222222222222, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=36.1111111111111, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=30.3370786516854, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=30.8641975308642, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=30.5084745762712, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI87081921, Length=161, Percent_Identity=31.055900621118, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62412; Mature: 62412

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRQRLTIFYGFALLFVGGLVSALVGQQAIVSNKTAAAEHLGDINRQFASLLDLRMWAR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNEVKTLAVIPVFGDRQRDPEARRLLEQAQEFVPMFTWIGFLDPQGTVSIATDRILEGQS
HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCC
IASRPVFQEGRQGEFIGDVHDAVLLANKFPLLPNGEPIQFVDIAIPVESIDGVFQGVLAA
HHCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
HLSWEWADNTQSTLMEPIAGERQKELFIISAEGNKLLGPEEWSDGTLMGFLPLEELAPGE
HHCCEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHCCCC
SRSLVLRWPGGTRYLTDIRRTQGYQNYPGLGWFTVARQPEAIALAPARSLARNIWVYSLL
CCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHH
IGSLSIVGIWYLSGWLSRPLRRLSRMSQQAWSTPETPISSRYRAPDEIQTVEQTIRHLQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
EGEQQKKARQLAEQASRRDPLTGLTNREGLRLFLADYPEGAIPNDQALAVLALDLDGFKQ
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHH
VNDHHGHGVGDELLKAVANRLRMELRVGQAGVRLGGDEFLLLLPLPMAQAENIARIIAQK
HCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEEECCCHHHHHHHHHHHHHH
VLFALTQPFELSHHTVEIGTSIGLAIWPIDHEDVLLVLDFADKALYQAKQAGKRRYIRWK
HHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEC
PCELPRRKQRGFLPKE
CCCCCCHHHCCCCCCC
>Mature Secondary Structure
MNYRQRLTIFYGFALLFVGGLVSALVGQQAIVSNKTAAAEHLGDINRQFASLLDLRMWAR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNEVKTLAVIPVFGDRQRDPEARRLLEQAQEFVPMFTWIGFLDPQGTVSIATDRILEGQS
HHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCC
IASRPVFQEGRQGEFIGDVHDAVLLANKFPLLPNGEPIQFVDIAIPVESIDGVFQGVLAA
HHCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
HLSWEWADNTQSTLMEPIAGERQKELFIISAEGNKLLGPEEWSDGTLMGFLPLEELAPGE
HHCCEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEHHHHCCCC
SRSLVLRWPGGTRYLTDIRRTQGYQNYPGLGWFTVARQPEAIALAPARSLARNIWVYSLL
CCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHH
IGSLSIVGIWYLSGWLSRPLRRLSRMSQQAWSTPETPISSRYRAPDEIQTVEQTIRHLQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
EGEQQKKARQLAEQASRRDPLTGLTNREGLRLFLADYPEGAIPNDQALAVLALDLDGFKQ
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHH
VNDHHGHGVGDELLKAVANRLRMELRVGQAGVRLGGDEFLLLLPLPMAQAENIARIIAQK
HCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCCEEEEECCCHHHHHHHHHHHHHH
VLFALTQPFELSHHTVEIGTSIGLAIWPIDHEDVLLVLDFADKALYQAKQAGKRRYIRWK
HHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEC
PCELPRRKQRGFLPKE
CCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]