| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079047
Identifier: 170079047
GI number: 170079047
Start: 2548021
End: 2550630
Strand: Reverse
Name: 170079047
Synonym: SYNPCC7002_A2452
Alternate gene names: NA
Gene position: 2550630-2548021 (Counterclockwise)
Preceding gene: 170079048
Following gene: 170079046
Centisome position: 84.79
GC content: 50.65
Gene sequence:
>2610_bases GTGGCAACGGCTCCCTGTCTTCCTCAACCGGCTGATTACGAAGCGCTGATTACGACGGATATTTTCAAACCAGCGCGCTA CTTGGGTAATGAACTGGGGGCAATCCATAAGCCTTGGCAAGGGGCAGTGGTGCGTTGGGTGCTGACCTATCCGGAAGTCT ATGAGGTGGGTTCCTCAAATTTGGGCCATATCCTGCTCTACAACGTGATTAATGCCCAACCTCGACAGTTGTGCGATCGC ACTTATCTACCCGCCGCTGATCTGAGCGAGAAGTTAAAGGAAAAAAATCTGCCGCTGTTTGCCCTCGAATCCAGGCGATC GCTGTTGGAATTCGACATTCTCGGCTTTAGCTTGAGCTATGAACTGGGGGCGACAAATATTCTCGAAATGCTTACCCTTG CCCAGATTCCCCTCACTTGGCAGGAACGAGATCAAGGAAATTATCCGTTCATTTTTGCGGGGGGACAAACAGCCACCTCC AACCCAGAACCCTACGCTGACTTTTTCGACTTTATCGTTCTCGGCGATGGCGAAGAACTTTTGCCCGAAGTGGGTTTTAT CCTCGAAGAAGCCAAGGTTAACGGTCTGAGTAAGGAAGAAACTCTGCTGGATTTAGCTCAAGTACCAGGGGTCTATGTGC CTCGCTTCTATGCAATGGCGGCGGATGGTTCTGTGCATTCAACCCGTGACGAAGTGCCCAAGCGAATTTTGCGCCGTGTC GCCACGCCAATTCCCGCCTATTCCATTGGTTTAGTGCCCTATGTGGAAACAGTTCATGATCGCCTGACGGTGGAAATTCG CCGGGGTTGTACCCGGGGCTGCCGCTTCTGCCAACCGGGAATGTTAACGCGGCCTGCAACGGATGTCGAACCAGAGAAAG TCGTCGATGCCATTGAAAAAGGAATGCGGGCGACGGGTTACAACGAATTTTCTCTACTTTCCCTCAGTTGTTCTGACTAT CTCTCGTTGCCAGCGGTAGGAGTCGAGATTAAAAATCGCCTCAAGGACGAAAACATTTCCCTATCTCTGCCTAGCCAGCG GGTTGATCGCTTTGATGAAAATATTGCCAATATTGTCGGTGGGACGCGTAAAGCGGGTTTAACCTTTGCCCCAGAAGCGG GCACCCAACGAATGCGGGATGTGATCAATAAGGGTTTGACGAACGAAGAACTGCTACGGGGTATCCAAACCGCGGTAAAA GAGGGCTGGGATAAGGTCAAGCTTTATTTCATGATCGGTCTCCCTGGAGAAACGGATCTCGATGTGTTGGGCATCGCGGA AACGGTGCAATGGCTGCGGCGGGAATGTGCGTCCCTGAGCAATCGCCGTTTAAACTTCAACATCACCATTTCTAATTTCA CCCCGAAACCCCACACACCTTTCCAGTGGCATTCGGTTTCGACGACAGAATTTAAGCGTAAACAGGAACTGTTGCGGGAA GCTTTTCGACCGATTCGCGGCGTGAAGGTGAACTATACCGATGTGCGCATTTCAGCCATGGAGGATTTCGTTGGCCGGGG CGATCGCCGTTTGGGTAAAGTCGTCCGCCGAGCCTGGGAACTGGGGGCGGGAATGGATTCTTGGTGGGAGAATTTAGACA AAGCCTATGGCGCTTGGGAACAGGCGATCGCCGAATCCGATCTCACCTGGAAGTACCGCAAAGTCGAAAGTGGCGAGTGG AATGTTTTTGAAACCACCGACAACGACCCCCTCGACGCCCCCTTGCCCTGGGATCACCTCAACACAGGCATTGATAAGCA GTGGCTCAAGGACGATTTAAAGCGAGCCCTCGAAGCAGCAACCATTCCCGACTGTGCCTTTGATGGTTGTTCCCATTGTG GCGTCTGCAGTACTGATTTTGGCCATAATGTCGTCTATCAACCGCCCGAAATTCCCGAATTTGTCGGTCAATTTCAAAAG GATCAAGAACGCCTACAACGGTTCCGGGTTTGGTTCGGTAAGCAAGGGGATATGCGCCTGGTTAGTCACCTCGATTTAGT CCGTTTATTTGACCGAGCTGTGCGCCGCGCTTCAATTCCCGTGGCTTTTACCAACGGCTTTCATCCGAGCCCCCGCATTT CCATCGCCAATGCCCTATCATTAGGAGCCACCAGCTCAGGAGAAATTATTGATTTTGAGTTGCGCCAAGTCTTGGATTTA GAAGATTTCCGGCGACGACTCGCTGAACAGTTGCCCATCGATATGCCGATCTATCGCGTTGAGGAAGTGCCCGTCCGTTC TAAGGCTGCCACTGCGCTCCTTACGGAAGCAGAATACCTGATTGATCTTGAAACCGAAGAACCCGTTTCTGCCGTACAGT GGGAAGCCTGGCTCGAAGTTATCCGTCAGACTCCGGAAATTCTCCTCGAAAAGAAAACGAAGTCTGGCAAAATTAAGCAA CTGAATCTCCGAGAAATGTTAACGGCGATCGCCCTCGAAAAAGTCATTAGCCCCACCCAAGTCCAACTCCGTTATCGAGG TAGTTGCCGCAATGATGGCACTTTATTACAAGCAGATCATATTCTTTATATGATGCATACTATGAGTCAGCAAAATATAA AATTGCTTAAGGTACACCGCTTTATTCTGTACTTATCTGAAGATATTTAA
Upstream 100 bases:
>100_bases CGCAGACATCCCAGTTACTCGCGGCCTAGCATCTCGAAAGCTCTCCGGTATAATGGGGGACTGAATTGTTTCCCTCGACT CCCTTGGAGGTTCATCACCT
Downstream 100 bases:
>100_bases TCTAGCTTAATTGATATTATCATTTCGCTTAAATATAACACCATCATCTGACTCGACTTCTCTCATTTATGTTCAAAAGA CTGTCGTTATTCAAAAAGCA
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 869; Mature: 868
Protein sequence:
>869_residues MATAPCLPQPADYEALITTDIFKPARYLGNELGAIHKPWQGAVVRWVLTYPEVYEVGSSNLGHILLYNVINAQPRQLCDR TYLPAADLSEKLKEKNLPLFALESRRSLLEFDILGFSLSYELGATNILEMLTLAQIPLTWQERDQGNYPFIFAGGQTATS NPEPYADFFDFIVLGDGEELLPEVGFILEEAKVNGLSKEETLLDLAQVPGVYVPRFYAMAADGSVHSTRDEVPKRILRRV ATPIPAYSIGLVPYVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPATDVEPEKVVDAIEKGMRATGYNEFSLLSLSCSDY LSLPAVGVEIKNRLKDENISLSLPSQRVDRFDENIANIVGGTRKAGLTFAPEAGTQRMRDVINKGLTNEELLRGIQTAVK EGWDKVKLYFMIGLPGETDLDVLGIAETVQWLRRECASLSNRRLNFNITISNFTPKPHTPFQWHSVSTTEFKRKQELLRE AFRPIRGVKVNYTDVRISAMEDFVGRGDRRLGKVVRRAWELGAGMDSWWENLDKAYGAWEQAIAESDLTWKYRKVESGEW NVFETTDNDPLDAPLPWDHLNTGIDKQWLKDDLKRALEAATIPDCAFDGCSHCGVCSTDFGHNVVYQPPEIPEFVGQFQK DQERLQRFRVWFGKQGDMRLVSHLDLVRLFDRAVRRASIPVAFTNGFHPSPRISIANALSLGATSSGEIIDFELRQVLDL EDFRRRLAEQLPIDMPIYRVEEVPVRSKAATALLTEAEYLIDLETEEPVSAVQWEAWLEVIRQTPEILLEKKTKSGKIKQ LNLREMLTAIALEKVISPTQVQLRYRGSCRNDGTLLQADHILYMMHTMSQQNIKLLKVHRFILYLSEDI
Sequences:
>Translated_869_residues MATAPCLPQPADYEALITTDIFKPARYLGNELGAIHKPWQGAVVRWVLTYPEVYEVGSSNLGHILLYNVINAQPRQLCDR TYLPAADLSEKLKEKNLPLFALESRRSLLEFDILGFSLSYELGATNILEMLTLAQIPLTWQERDQGNYPFIFAGGQTATS NPEPYADFFDFIVLGDGEELLPEVGFILEEAKVNGLSKEETLLDLAQVPGVYVPRFYAMAADGSVHSTRDEVPKRILRRV ATPIPAYSIGLVPYVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPATDVEPEKVVDAIEKGMRATGYNEFSLLSLSCSDY LSLPAVGVEIKNRLKDENISLSLPSQRVDRFDENIANIVGGTRKAGLTFAPEAGTQRMRDVINKGLTNEELLRGIQTAVK EGWDKVKLYFMIGLPGETDLDVLGIAETVQWLRRECASLSNRRLNFNITISNFTPKPHTPFQWHSVSTTEFKRKQELLRE AFRPIRGVKVNYTDVRISAMEDFVGRGDRRLGKVVRRAWELGAGMDSWWENLDKAYGAWEQAIAESDLTWKYRKVESGEW NVFETTDNDPLDAPLPWDHLNTGIDKQWLKDDLKRALEAATIPDCAFDGCSHCGVCSTDFGHNVVYQPPEIPEFVGQFQK DQERLQRFRVWFGKQGDMRLVSHLDLVRLFDRAVRRASIPVAFTNGFHPSPRISIANALSLGATSSGEIIDFELRQVLDL EDFRRRLAEQLPIDMPIYRVEEVPVRSKAATALLTEAEYLIDLETEEPVSAVQWEAWLEVIRQTPEILLEKKTKSGKIKQ LNLREMLTAIALEKVISPTQVQLRYRGSCRNDGTLLQADHILYMMHTMSQQNIKLLKVHRFILYLSEDI >Mature_868_residues ATAPCLPQPADYEALITTDIFKPARYLGNELGAIHKPWQGAVVRWVLTYPEVYEVGSSNLGHILLYNVINAQPRQLCDRT YLPAADLSEKLKEKNLPLFALESRRSLLEFDILGFSLSYELGATNILEMLTLAQIPLTWQERDQGNYPFIFAGGQTATSN PEPYADFFDFIVLGDGEELLPEVGFILEEAKVNGLSKEETLLDLAQVPGVYVPRFYAMAADGSVHSTRDEVPKRILRRVA TPIPAYSIGLVPYVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPATDVEPEKVVDAIEKGMRATGYNEFSLLSLSCSDYL SLPAVGVEIKNRLKDENISLSLPSQRVDRFDENIANIVGGTRKAGLTFAPEAGTQRMRDVINKGLTNEELLRGIQTAVKE GWDKVKLYFMIGLPGETDLDVLGIAETVQWLRRECASLSNRRLNFNITISNFTPKPHTPFQWHSVSTTEFKRKQELLREA FRPIRGVKVNYTDVRISAMEDFVGRGDRRLGKVVRRAWELGAGMDSWWENLDKAYGAWEQAIAESDLTWKYRKVESGEWN VFETTDNDPLDAPLPWDHLNTGIDKQWLKDDLKRALEAATIPDCAFDGCSHCGVCSTDFGHNVVYQPPEIPEFVGQFQKD QERLQRFRVWFGKQGDMRLVSHLDLVRLFDRAVRRASIPVAFTNGFHPSPRISIANALSLGATSSGEIIDFELRQVLDLE DFRRRLAEQLPIDMPIYRVEEVPVRSKAATALLTEAEYLIDLETEEPVSAVQWEAWLEVIRQTPEILLEKKTKSGKIKQL NLREMLTAIALEKVISPTQVQLRYRGSCRNDGTLLQADHILYMMHTMSQQNIKLLKVHRFILYLSEDI
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 98531; Mature: 98400
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS00387 PPASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAPCLPQPADYEALITTDIFKPARYLGNELGAIHKPWQGAVVRWVLTYPEVYEVGSSN CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCC LGHILLYNVINAQPRQLCDRTYLPAADLSEKLKEKNLPLFALESRRSLLEFDILGFSLSY CCCEEEEHHHCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHEEEEEEEEE ELGATNILEMLTLAQIPLTWQERDQGNYPFIFAGGQTATSNPEPYADFFDFIVLGDGEEL CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHEEEEEECCCHHH LPEVGFILEEAKVNGLSKEETLLDLAQVPGVYVPRFYAMAADGSVHSTRDEVPKRILRRV HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH ATPIPAYSIGLVPYVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPATDVEPEKVVDAIEK CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH GMRATGYNEFSLLSLSCSDYLSLPAVGVEIKNRLKDENISLSLPSQRVDRFDENIANIVG CCHHCCCCCEEEEEECHHHHHCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC GTRKAGLTFAPEAGTQRMRDVINKGLTNEELLRGIQTAVKEGWDKVKLYFMIGLPGETDL CCCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC DVLGIAETVQWLRRECASLSNRRLNFNITISNFTPKPHTPFQWHSVSTTEFKRKQELLRE HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHH AFRPIRGVKVNYTDVRISAMEDFVGRGDRRLGKVVRRAWELGAGMDSWWENLDKAYGAWE HHHHHCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QAIAESDLTWKYRKVESGEWNVFETTDNDPLDAPLPWDHLNTGIDKQWLKDDLKRALEAA HHHHCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHC TIPDCAFDGCSHCGVCSTDFGHNVVYQPPEIPEFVGQFQKDQERLQRFRVWFGKQGDMRL CCCCHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VSHLDLVRLFDRAVRRASIPVAFTNGFHPSPRISIANALSLGATSSGEIIDFELRQVLDL HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEHHHHHCCCCCCCCCEEEHHHHHHCCH EDFRRRLAEQLPIDMPIYRVEEVPVRSKAATALLTEAEYLIDLETEEPVSAVQWEAWLEV HHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH IRQTPEILLEKKTKSGKIKQLNLREMLTAIALEKVISPTQVQLRYRGSCRNDGTLLQADH HHHCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEHHH ILYMMHTMSQQNIKLLKVHRFILYLSEDI HHHHHHHHCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATAPCLPQPADYEALITTDIFKPARYLGNELGAIHKPWQGAVVRWVLTYPEVYEVGSSN CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCC LGHILLYNVINAQPRQLCDRTYLPAADLSEKLKEKNLPLFALESRRSLLEFDILGFSLSY CCCEEEEHHHCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHEEEEEEEEE ELGATNILEMLTLAQIPLTWQERDQGNYPFIFAGGQTATSNPEPYADFFDFIVLGDGEEL CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHEEEEEECCCHHH LPEVGFILEEAKVNGLSKEETLLDLAQVPGVYVPRFYAMAADGSVHSTRDEVPKRILRRV HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH ATPIPAYSIGLVPYVETVHDRLTVEIRRGCTRGCRFCQPGMLTRPATDVEPEKVVDAIEK CCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH GMRATGYNEFSLLSLSCSDYLSLPAVGVEIKNRLKDENISLSLPSQRVDRFDENIANIVG CCHHCCCCCEEEEEECHHHHHCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC GTRKAGLTFAPEAGTQRMRDVINKGLTNEELLRGIQTAVKEGWDKVKLYFMIGLPGETDL CCCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCC DVLGIAETVQWLRRECASLSNRRLNFNITISNFTPKPHTPFQWHSVSTTEFKRKQELLRE HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHH AFRPIRGVKVNYTDVRISAMEDFVGRGDRRLGKVVRRAWELGAGMDSWWENLDKAYGAWE HHHHHCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QAIAESDLTWKYRKVESGEWNVFETTDNDPLDAPLPWDHLNTGIDKQWLKDDLKRALEAA HHHHCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHC TIPDCAFDGCSHCGVCSTDFGHNVVYQPPEIPEFVGQFQKDQERLQRFRVWFGKQGDMRL CCCCHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH VSHLDLVRLFDRAVRRASIPVAFTNGFHPSPRISIANALSLGATSSGEIIDFELRQVLDL HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEHHHHHCCCCCCCCCEEEHHHHHHCCH EDFRRRLAEQLPIDMPIYRVEEVPVRSKAATALLTEAEYLIDLETEEPVSAVQWEAWLEV HHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHH IRQTPEILLEKKTKSGKIKQLNLREMLTAIALEKVISPTQVQLRYRGSCRNDGTLLQADH HHHCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEHHH ILYMMHTMSQQNIKLLKVHRFILYLSEDI HHHHHHHHCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]