| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079014
Identifier: 170079014
GI number: 170079014
Start: 2508895
End: 2510472
Strand: Reverse
Name: 170079014
Synonym: SYNPCC7002_A2419
Alternate gene names: NA
Gene position: 2510472-2508895 (Counterclockwise)
Preceding gene: 170079017
Following gene: 170079010
Centisome position: 83.46
GC content: 48.92
Gene sequence:
>1578_bases ATGACTATTGCACCACGCAGACAACCTAGCCGTACCAAACGTAATCGTACCAGTCTGCTTTTTGAGCGGGGTATGGCTCT CTTGGCCTCTGCTAATTTGGTGTTAGTCCTCTTTGACCTGAGTTACATCCCCCTGCGTAATTTCTGGTTACAGGGCCGAG TTCAATTTTACGCACGCATCGCTAAATATGAATGGAAATTTCCCGCCGAGCCGGTGCGTATTCTCCCGGTTAATGTAACC CACGCCTATGACTGGGTAAAGGGCATCGAAGAAAATCGCGATACCGCCTACTATCTCCAACGGGTCGAAGATCTCCAAGC AAAAATTCAGCAGATTAACGATCTGACCCTCCGGTCTACAGGTTCAAATAATGGCATTGTCGGTTCTGGCGATCGCCAAG ACATCACCACCCAACTCCGCCGCTACAACCAAGAACAAGAAGCCATCCTTGCTGAACTCCGGGAACTGAGCGTTGAGATG GTGGATACCAATCCCTTTGAAATTGCCAACAAAACAGGTACCCTCGAAAAAATCAAAAATCGCATGCGCCGCCATGTATT TGGCGATGCCTCTGCCTCCTCCAAAGACGCCTTTCAACTCTTTTGGAGTAGCGAATATCTCTCAGAAAATGGCTGGCGTG AAGAATTCAACTTTTACGAACGCGAAATCGAACCCCTCCTAGAAACCAACTATTTCCGTCCCATTGGCGAAAACGGCAAA TACATTGATAACTTTGGCATTCTCGATTTTCCCTTCTTTCTCGCTTTCCTCCTCGAGTTTCTCGCCCGGAGTTGGTACAT CAGTCGGCGTCGCACAGGCGTAAGTTGGTTTGATGCCATGCTCTGGCGTTGGTACGATATTTTTCTGCTGATTCCCCTTT TCCGTTGGTTACGGGTGATTCCTGTGATCGTTCGTCTCAATCAAGCCGACCTTATTGATCTCAGCGCAATCCAAAAGCAA GCCAGTCAAGGTTTTGTTGCTGGCATTGCCGAAGATATTACCGAAGTCGTTGTCATTCGGATTATCAATCAAATCCAAGG CTCCATCCACCGGGGTGAATTTGCCACTCTTTTGGCCCAAACCACCAGCCGAGAATATGTCGATTTAAATGACATTAATG AACCCGTCGAGCTCGCAAAGCTCATGGCCAACCTCTTAGTCCACCAAGTCTTACCCAAAATTCAGCCCGAGGCCGAAGCC GTCATTCGCCATACCCTGGATCGAGTCATTTCCATGTCCCCTGCCTACCAAGGCTTACAGATGCTGCCCGGCATTGGCGA TCTTAAAGGCACCCTGGCCAAGCAACTCTCCCATCAACTTTATCAAGTCACCGCAGACACCCTCAAAGCAGTCCTCGAAG AAGACCCCGTCTTTGAACAACTGCTCGAAGAACTCTTAACCCAACTCACCAGCAGCATCACCTCCGAGATCCAAGGCCAA GAAAGCCTCGCCCAAATGGAATCACTGATCAATGACCTCCTCGAAGAAGTCAAAATTAATTACGTTGAGAGACTCTCTGA AGAAGATGTCGAAGACATTCTGGAACAAACCCGTGCCCTGCGGCAGATGACCCGTTAA
Upstream 100 bases:
>100_bases ACCTTGTATTTAGTCCGCCTGCCCATAGAACCCGATAAAATAAACTGAAAATTTGATTCAATCCTGCTCAAAATTCACAA AAAATCGCCCTTAATTTACC
Downstream 100 bases:
>100_bases ATTCACCCATAAAAAAACGAGGGTAAATCACTTACCCCCGCTGTTTGTTTACATTGCCAATACGATTGAAATCACAATGG CGATCGCTTACTTGGTTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 525; Mature: 524
Protein sequence:
>525_residues MTIAPRRQPSRTKRNRTSLLFERGMALLASANLVLVLFDLSYIPLRNFWLQGRVQFYARIAKYEWKFPAEPVRILPVNVT HAYDWVKGIEENRDTAYYLQRVEDLQAKIQQINDLTLRSTGSNNGIVGSGDRQDITTQLRRYNQEQEAILAELRELSVEM VDTNPFEIANKTGTLEKIKNRMRRHVFGDASASSKDAFQLFWSSEYLSENGWREEFNFYEREIEPLLETNYFRPIGENGK YIDNFGILDFPFFLAFLLEFLARSWYISRRRTGVSWFDAMLWRWYDIFLLIPLFRWLRVIPVIVRLNQADLIDLSAIQKQ ASQGFVAGIAEDITEVVVIRIINQIQGSIHRGEFATLLAQTTSREYVDLNDINEPVELAKLMANLLVHQVLPKIQPEAEA VIRHTLDRVISMSPAYQGLQMLPGIGDLKGTLAKQLSHQLYQVTADTLKAVLEEDPVFEQLLEELLTQLTSSITSEIQGQ ESLAQMESLINDLLEEVKINYVERLSEEDVEDILEQTRALRQMTR
Sequences:
>Translated_525_residues MTIAPRRQPSRTKRNRTSLLFERGMALLASANLVLVLFDLSYIPLRNFWLQGRVQFYARIAKYEWKFPAEPVRILPVNVT HAYDWVKGIEENRDTAYYLQRVEDLQAKIQQINDLTLRSTGSNNGIVGSGDRQDITTQLRRYNQEQEAILAELRELSVEM VDTNPFEIANKTGTLEKIKNRMRRHVFGDASASSKDAFQLFWSSEYLSENGWREEFNFYEREIEPLLETNYFRPIGENGK YIDNFGILDFPFFLAFLLEFLARSWYISRRRTGVSWFDAMLWRWYDIFLLIPLFRWLRVIPVIVRLNQADLIDLSAIQKQ ASQGFVAGIAEDITEVVVIRIINQIQGSIHRGEFATLLAQTTSREYVDLNDINEPVELAKLMANLLVHQVLPKIQPEAEA VIRHTLDRVISMSPAYQGLQMLPGIGDLKGTLAKQLSHQLYQVTADTLKAVLEEDPVFEQLLEELLTQLTSSITSEIQGQ ESLAQMESLINDLLEEVKINYVERLSEEDVEDILEQTRALRQMTR >Mature_524_residues TIAPRRQPSRTKRNRTSLLFERGMALLASANLVLVLFDLSYIPLRNFWLQGRVQFYARIAKYEWKFPAEPVRILPVNVTH AYDWVKGIEENRDTAYYLQRVEDLQAKIQQINDLTLRSTGSNNGIVGSGDRQDITTQLRRYNQEQEAILAELRELSVEMV DTNPFEIANKTGTLEKIKNRMRRHVFGDASASSKDAFQLFWSSEYLSENGWREEFNFYEREIEPLLETNYFRPIGENGKY IDNFGILDFPFFLAFLLEFLARSWYISRRRTGVSWFDAMLWRWYDIFLLIPLFRWLRVIPVIVRLNQADLIDLSAIQKQA SQGFVAGIAEDITEVVVIRIINQIQGSIHRGEFATLLAQTTSREYVDLNDINEPVELAKLMANLLVHQVLPKIQPEAEAV IRHTLDRVISMSPAYQGLQMLPGIGDLKGTLAKQLSHQLYQVTADTLKAVLEEDPVFEQLLEELLTQLTSSITSEIQGQE SLAQMESLINDLLEEVKINYVERLSEEDVEDILEQTRALRQMTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60775; Mature: 60644
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIAPRRQPSRTKRNRTSLLFERGMALLASANLVLVLFDLSYIPLRNFWLQGRVQFYARI CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH AKYEWKFPAEPVRILPVNVTHAYDWVKGIEENRDTAYYLQRVEDLQAKIQQINDLTLRST HHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEC GSNNGIVGSGDRQDITTQLRRYNQEQEAILAELRELSVEMVDTNPFEIANKTGTLEKIKN CCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHH RMRRHVFGDASASSKDAFQLFWSSEYLSENGWREEFNFYEREIEPLLETNYFRPIGENGK HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC YIDNFGILDFPFFLAFLLEFLARSWYISRRRTGVSWFDAMLWRWYDIFLLIPLFRWLRVI EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PVIVRLNQADLIDLSAIQKQASQGFVAGIAEDITEVVVIRIINQIQGSIHRGEFATLLAQ HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TTSREYVDLNDINEPVELAKLMANLLVHQVLPKIQPEAEAVIRHTLDRVISMSPAYQGLQ HCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH MLPGIGDLKGTLAKQLSHQLYQVTADTLKAVLEEDPVFEQLLEELLTQLTSSITSEIQGQ HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH ESLAQMESLINDLLEEVKINYVERLSEEDVEDILEQTRALRQMTR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIAPRRQPSRTKRNRTSLLFERGMALLASANLVLVLFDLSYIPLRNFWLQGRVQFYARI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHH AKYEWKFPAEPVRILPVNVTHAYDWVKGIEENRDTAYYLQRVEDLQAKIQQINDLTLRST HHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEC GSNNGIVGSGDRQDITTQLRRYNQEQEAILAELRELSVEMVDTNPFEIANKTGTLEKIKN CCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHH RMRRHVFGDASASSKDAFQLFWSSEYLSENGWREEFNFYEREIEPLLETNYFRPIGENGK HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC YIDNFGILDFPFFLAFLLEFLARSWYISRRRTGVSWFDAMLWRWYDIFLLIPLFRWLRVI EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PVIVRLNQADLIDLSAIQKQASQGFVAGIAEDITEVVVIRIINQIQGSIHRGEFATLLAQ HHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH TTSREYVDLNDINEPVELAKLMANLLVHQVLPKIQPEAEAVIRHTLDRVISMSPAYQGLQ HCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH MLPGIGDLKGTLAKQLSHQLYQVTADTLKAVLEEDPVFEQLLEELLTQLTSSITSEIQGQ HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCH ESLAQMESLINDLLEEVKINYVERLSEEDVEDILEQTRALRQMTR HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA