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The map label for this gene is sbcD [H]

Identifier: 170078937

GI number: 170078937

Start: 2418419

End: 2419645

Strand: Reverse

Name: sbcD [H]

Synonym: SYNPCC7002_A2342

Alternate gene names: 170078937

Gene position: 2419645-2418419 (Counterclockwise)

Preceding gene: 170078940

Following gene: 170078929

Centisome position: 80.44

GC content: 54.52

Gene sequence:

>1227_bases
ATGTTCAGAATTCTTCACTTCGCCGATATCCATATGGGCAGCGGTTTTTCCCATGGTCGGGTGAACCCAGAAACCGGCCT
CAATTCCCGTCTCGAAGATTTTGAGCAGACCCTGGGGCTTTGTATCGACCGGGCGATCGCCGACCCCGTAGACCTTGTTA
TTTTTGCTGGGGATGCCTTCCCCGATGCCACCCCCGCCCCCTACATCCACGAAGCCTTTGCGGGCCAATTTCGCCGCCTC
GTCGCCCACAATATCCCGGCGGTGCTTGTCGTCGGCAACCATGACCAATATTCCCAAGGCAATGGGGGCGCTAGTTTAAA
TATCTATCGCACCCTGGCGGTGCCTGGTTTTATCGTGGGCGATCACCTCCGCACCCACACTCTCGAACTGCCCAAAGGCC
CCCTGCAAATCATTACCCTGCCCTGGTTGAACCAAGCCACCCTCCTCACCCGGCAACAAACCGAAGGCAAAACCCTCAAC
GAAATCCATCAGATCCTGCTCCAAAAACTCGAACCGATCCTCGAAGCCGAAATTCGTCGCCTCAATCCCGAAATTCCCGC
GATCCTGGTGGGCCATCTCATGGCCGACCGCGCCAACTTAGGGGCCGAGCGCTTCCTCGCTGTGGGCAAAGGCTTTAATA
TTCCTGTGGCTTTTCTGAACCGTTCCGAACTCGATTATGTGGCCCTCGGCCATGTGCACCGCCACCAAAACCTCAACCCC
AGCAATGATCCCCCGATTATCTATCCTGGCAGCATTGAACGGGTTGATTTTAGCGAGGAAAAAGAAGCAAAGGGCTATGT
TTTAATCAACCTCCGTAAAGGTCAAGCGGATTGGGAATTTGTGCCCCTCCCGGCCCGGGCGTTCCGCACGATTAAAATCG
ATGTGAGCGACGCAGACGAGCCAGAAACTGCGATTCTCAACGAAATTGCACAGGTTTCGATCACCAATACCGTTGTCCGT
CTCATCTACAAAATTCGCCCCGAACAAACAGAACTCATCGACCAACGTGCCCTCAGAAAAGCCCTCAAAGCCGCCCACCA
AGCTTCCATTCAAGCGGAACTGGTGAGCCAACTGTCCCGGCCCCGTCTACCGGAACTGGGCATTGGTCAATCCCTCGATC
CGATGAATGCCCTAGATACTTACCTCACGAACCGAGAAGATTTACAGGATATTGCCCTCGCCATGCGCGAAACCGCCACA
GAACTGATGTCACAAACCTCAACTTGA

Upstream 100 bases:

>100_bases
ACTCACGGTGACGCTTCATATTATGATTGGGGGTGATGGGAGGGGCGATCGCCTTCCATTGTAAGAAATCAAAAATTAGG
CCATCCAAACTACCGCCACC

Downstream 100 bases:

>100_bases
GAGGGGATTTATAAAGTAAATCTTAAGCGGCTATATCTACCGCGAAATAATGGTCTTAAGCGATGTAGGACGCTTGATCT
ACATGGCGACGAATGAAGCC

Product: exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MFRILHFADIHMGSGFSHGRVNPETGLNSRLEDFEQTLGLCIDRAIADPVDLVIFAGDAFPDATPAPYIHEAFAGQFRRL
VAHNIPAVLVVGNHDQYSQGNGGASLNIYRTLAVPGFIVGDHLRTHTLELPKGPLQIITLPWLNQATLLTRQQTEGKTLN
EIHQILLQKLEPILEAEIRRLNPEIPAILVGHLMADRANLGAERFLAVGKGFNIPVAFLNRSELDYVALGHVHRHQNLNP
SNDPPIIYPGSIERVDFSEEKEAKGYVLINLRKGQADWEFVPLPARAFRTIKIDVSDADEPETAILNEIAQVSITNTVVR
LIYKIRPEQTELIDQRALRKALKAAHQASIQAELVSQLSRPRLPELGIGQSLDPMNALDTYLTNREDLQDIALAMRETAT
ELMSQTST

Sequences:

>Translated_408_residues
MFRILHFADIHMGSGFSHGRVNPETGLNSRLEDFEQTLGLCIDRAIADPVDLVIFAGDAFPDATPAPYIHEAFAGQFRRL
VAHNIPAVLVVGNHDQYSQGNGGASLNIYRTLAVPGFIVGDHLRTHTLELPKGPLQIITLPWLNQATLLTRQQTEGKTLN
EIHQILLQKLEPILEAEIRRLNPEIPAILVGHLMADRANLGAERFLAVGKGFNIPVAFLNRSELDYVALGHVHRHQNLNP
SNDPPIIYPGSIERVDFSEEKEAKGYVLINLRKGQADWEFVPLPARAFRTIKIDVSDADEPETAILNEIAQVSITNTVVR
LIYKIRPEQTELIDQRALRKALKAAHQASIQAELVSQLSRPRLPELGIGQSLDPMNALDTYLTNREDLQDIALAMRETAT
ELMSQTST
>Mature_408_residues
MFRILHFADIHMGSGFSHGRVNPETGLNSRLEDFEQTLGLCIDRAIADPVDLVIFAGDAFPDATPAPYIHEAFAGQFRRL
VAHNIPAVLVVGNHDQYSQGNGGASLNIYRTLAVPGFIVGDHLRTHTLELPKGPLQIITLPWLNQATLLTRQQTEGKTLN
EIHQILLQKLEPILEAEIRRLNPEIPAILVGHLMADRANLGAERFLAVGKGFNIPVAFLNRSELDYVALGHVHRHQNLNP
SNDPPIIYPGSIERVDFSEEKEAKGYVLINLRKGQADWEFVPLPARAFRTIKIDVSDADEPETAILNEIAQVSITNTVVR
LIYKIRPEQTELIDQRALRKALKAAHQASIQAELVSQLSRPRLPELGIGQSLDPMNALDTYLTNREDLQDIALAMRETAT
ELMSQTST

Specific function: SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sbcD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR004593 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 45365; Mature: 45365

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRILHFADIHMGSGFSHGRVNPETGLNSRLEDFEQTLGLCIDRAIADPVDLVIFAGDAF
CEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
PDATPAPYIHEAFAGQFRRLVAHNIPAVLVVGNHDQYSQGNGGASLNIYRTLAVPGFIVG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEC
DHLRTHTLELPKGPLQIITLPWLNQATLLTRQQTEGKTLNEIHQILLQKLEPILEAEIRR
CCHHHEEEECCCCCEEEEEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNPEIPAILVGHLMADRANLGAERFLAVGKGFNIPVAFLNRSELDYVALGHVHRHQNLNP
CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHCCCCCC
SNDPPIIYPGSIERVDFSEEKEAKGYVLINLRKGQADWEFVPLPARAFRTIKIDVSDADE
CCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCHHHEEEEEEECCCCCC
PETAILNEIAQVSITNTVVRLIYKIRPEQTELIDQRALRKALKAAHQASIQAELVSQLSR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRLPELGIGQSLDPMNALDTYLTNREDLQDIALAMRETATELMSQTST
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFRILHFADIHMGSGFSHGRVNPETGLNSRLEDFEQTLGLCIDRAIADPVDLVIFAGDAF
CEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
PDATPAPYIHEAFAGQFRRLVAHNIPAVLVVGNHDQYSQGNGGASLNIYRTLAVPGFIVG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEC
DHLRTHTLELPKGPLQIITLPWLNQATLLTRQQTEGKTLNEIHQILLQKLEPILEAEIRR
CCHHHEEEECCCCCEEEEEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNPEIPAILVGHLMADRANLGAERFLAVGKGFNIPVAFLNRSELDYVALGHVHRHQNLNP
CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHCCCCCC
SNDPPIIYPGSIERVDFSEEKEAKGYVLINLRKGQADWEFVPLPARAFRTIKIDVSDADE
CCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCHHHEEEEEEECCCCCC
PETAILNEIAQVSITNTVVRLIYKIRPEQTELIDQRALRKALKAAHQASIQAELVSQLSR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRLPELGIGQSLDPMNALDTYLTNREDLQDIALAMRETATELMSQTST
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA