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The map label for this gene is desC

Identifier: 170078796

GI number: 170078796

Start: 2286851

End: 2287783

Strand: Direct

Name: desC

Synonym: SYNPCC7002_A2198

Alternate gene names: NA

Gene position: 2286851-2287783 (Clockwise)

Preceding gene: 170078794

Following gene: 170078797

Centisome position: 76.02

GC content: 48.77

Gene sequence:

>933_bases
TTGCTGAGCCGTGCTTGTGTTTATCATGTAGGACAGTGGAAAAAATACGGAGCCTCCGCATACCATGTCCCACAGTACAA
TTTCCAGAAAGGATATTTCATGACTGTTGCCACTTCCCAAAAACTCCCCCTAGATTGGACAACGATTATCTATTTCAGCT
TGATCCATCTAGTCGCCCTCCTTGCCTTTTTACCCGGTAACTTTAGTTGGCAAGCCGTGGGCGTCTTTTTATTGTTTCAC
TGGATTACCGGCGGCATTGGAATTACCCTAGGGTTCCATCGCCTCGTGTCCCACCGTAGCTTTGAAGTACCAAAGTGGCT
TGAGTATTTCTTGATTTTCTGTGGCACCCTCGCCTGTCAGGGGGGGCCGATTGACTGGATTGGGCTACACCGCATCCACC
ACAAACATTCTGACAACACACCCGATCCCCATGACTCCAATAAAGGCTTCTGGTGGAGTCACATCGGTTGGATGCTGTTT
GAAATTCCTGCCCGTGGCGATATTGATCGCTACATCAAAGACATTAAGGACGATCCTTTCTATAATTTTTGCCAAAAATA
CATGGTTCTCATCCAGGTGGCCTTGGGTTTAGCCCTTTATGCCTGGGGAGAAGCCTGGGTCGGTAACGGCTGGTCTTTCG
TGATTTGGGGCGTGTTTCTCCGCCTTGCCGTGGTTTTCCACTGTACCTGGTTTGTGAATAGTGCCACCCATAAATTTGGC
TATAAAAGCCATGAGTCCAACGACCACTCCAAGAACTGCTGGTGGGTTGCCCTTGTCACCTACGGCGAAGGTTGGCACAA
CAATCACCATGCCTATCAATATTCCGCGCGCCATGGCCTCAACTGGTGGGAAATTGATATGACTTGGATGACAATTCGTT
TCCTACAAGCCTTGGGATTGGCCAAAAATATTCGTCTCGCTCCGGCCAAGTAA

Upstream 100 bases:

>100_bases
TTTCAGCCCAAAGTTCCGAATTTTCAAGATTTTTGTGCTTCGCTTTGAAAGACTTCTCCGACGATAGGCACTGTCTTTCT
AAAGTGTTCTTATCTTCCCT

Downstream 100 bases:

>100_bases
CAAAAATAACGACCATCCTGGAAAGTTAAGTTGTTGTAGATGTCCTTTGAAAAGGGGGCATCTTTTTATTTTTGGCTTTT
GGCAAGACTCATTACTTCTT

Product: delta-9 acyl-lipid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Subfamily; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Fatty Acid Desaturase Family Protein; Stearoyl-CoA Desaturase; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Fatty Acid Desaturase Protein; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLSRACVYHVGQWKKYGASAYHVPQYNFQKGYFMTVATSQKLPLDWTTIIYFSLIHLVALLAFLPGNFSWQAVGVFLLFH
WITGGIGITLGFHRLVSHRSFEVPKWLEYFLIFCGTLACQGGPIDWIGLHRIHHKHSDNTPDPHDSNKGFWWSHIGWMLF
EIPARGDIDRYIKDIKDDPFYNFCQKYMVLIQVALGLALYAWGEAWVGNGWSFVIWGVFLRLAVVFHCTWFVNSATHKFG
YKSHESNDHSKNCWWVALVTYGEGWHNNHHAYQYSARHGLNWWEIDMTWMTIRFLQALGLAKNIRLAPAK

Sequences:

>Translated_310_residues
MLSRACVYHVGQWKKYGASAYHVPQYNFQKGYFMTVATSQKLPLDWTTIIYFSLIHLVALLAFLPGNFSWQAVGVFLLFH
WITGGIGITLGFHRLVSHRSFEVPKWLEYFLIFCGTLACQGGPIDWIGLHRIHHKHSDNTPDPHDSNKGFWWSHIGWMLF
EIPARGDIDRYIKDIKDDPFYNFCQKYMVLIQVALGLALYAWGEAWVGNGWSFVIWGVFLRLAVVFHCTWFVNSATHKFG
YKSHESNDHSKNCWWVALVTYGEGWHNNHHAYQYSARHGLNWWEIDMTWMTIRFLQALGLAKNIRLAPAK
>Mature_310_residues
MLSRACVYHVGQWKKYGASAYHVPQYNFQKGYFMTVATSQKLPLDWTTIIYFSLIHLVALLAFLPGNFSWQAVGVFLLFH
WITGGIGITLGFHRLVSHRSFEVPKWLEYFLIFCGTLACQGGPIDWIGLHRIHHKHSDNTPDPHDSNKGFWWSHIGWMLF
EIPARGDIDRYIKDIKDDPFYNFCQKYMVLIQVALGLALYAWGEAWVGNGWSFVIWGVFLRLAVVFHCTWFVNSATHKFG
YKSHESNDHSKNCWWVALVTYGEGWHNNHHAYQYSARHGLNWWEIDMTWMTIRFLQALGLAKNIRLAPAK

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=293, Percent_Identity=34.1296928327645, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI148596961, Length=289, Percent_Identity=32.8719723183391, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI148596938, Length=152, Percent_Identity=34.8684210526316, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17561774, Length=285, Percent_Identity=28.4210526315789, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17561776, Length=251, Percent_Identity=30.6772908366534, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17540878, Length=250, Percent_Identity=30.8, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6321383, Length=234, Percent_Identity=30.7692307692308, Blast_Score=133, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24646303, Length=286, Percent_Identity=33.5664335664336, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI24646299, Length=286, Percent_Identity=33.5664335664336, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI24646305, Length=286, Percent_Identity=33.5664335664336, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI24646301, Length=286, Percent_Identity=33.5664335664336, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI24646297, Length=286, Percent_Identity=33.5664335664336, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI21358571, Length=284, Percent_Identity=32.0422535211268, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24646295, Length=288, Percent_Identity=32.6388888888889, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24646500, Length=276, Percent_Identity=30.4347826086957, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24662393, Length=280, Percent_Identity=29.2857142857143, Blast_Score=114, Evalue=8e-26,
Organism=Drosophila melanogaster, GI21358573, Length=242, Percent_Identity=32.6446280991736, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24651333, Length=165, Percent_Identity=29.6969696969697, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161079187, Length=165, Percent_Identity=29.6969696969697, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36118; Mature: 36118

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRACVYHVGQWKKYGASAYHVPQYNFQKGYFMTVATSQKLPLDWTTIIYFSLIHLVAL
CCCCHHHHHCCCHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LAFLPGNFSWQAVGVFLLFHWITGGIGITLGFHRLVSHRSFEVPKWLEYFLIFCGTLACQ
HHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
GGPIDWIGLHRIHHKHSDNTPDPHDSNKGFWWSHIGWMLFEIPARGDIDRYIKDIKDDPF
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCEEEEECCCCCCHHHHHHHCCCCHH
YNFCQKYMVLIQVALGLALYAWGEAWVGNGWSFVIWGVFLRLAVVFHCTWFVNSATHKFG
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
YKSHESNDHSKNCWWVALVTYGEGWHNNHHAYQYSARHGLNWWEIDMTWMTIRFLQALGL
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEHHHCCCCEEEEEHHHHHHHHHHHHCC
AKNIRLAPAK
CCCCEECCCC
>Mature Secondary Structure
MLSRACVYHVGQWKKYGASAYHVPQYNFQKGYFMTVATSQKLPLDWTTIIYFSLIHLVAL
CCCCHHHHHCCCHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
LAFLPGNFSWQAVGVFLLFHWITGGIGITLGFHRLVSHRSFEVPKWLEYFLIFCGTLACQ
HHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
GGPIDWIGLHRIHHKHSDNTPDPHDSNKGFWWSHIGWMLFEIPARGDIDRYIKDIKDDPF
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHCEEEEECCCCCCHHHHHHHCCCCHH
YNFCQKYMVLIQVALGLALYAWGEAWVGNGWSFVIWGVFLRLAVVFHCTWFVNSATHKFG
HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
YKSHESNDHSKNCWWVALVTYGEGWHNNHHAYQYSARHGLNWWEIDMTWMTIRFLQALGL
CCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEHHHCCCCEEEEEHHHHHHHHHHHHCC
AKNIRLAPAK
CCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA