| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078771
Identifier: 170078771
GI number: 170078771
Start: 2253674
End: 2255215
Strand: Direct
Name: 170078771
Synonym: SYNPCC7002_A2173
Alternate gene names: NA
Gene position: 2253674-2255215 (Clockwise)
Preceding gene: 170078770
Following gene: 170078772
Centisome position: 74.92
GC content: 52.53
Gene sequence:
>1542_bases ATGCCTAATTTTCTTGACCATTCACGACTAATCCTCAAGCGATCGCCACTGGCGATCGCCCTAGTTAGCGTTGGCTTGAA TTTAGGTATGCCTTTGGTTTTGGCCCAGTCCCTGGAGACAGTAGAGAATATCACCCTCTTCAACCGGGCCGAAGCCAGTT ACCAAATTGAGGAGAATGGCCCAGCCGCAAATATCACCAGTAACCAAGTGATCCTTGGCTCTGGTAATCCGCCACCGCCA CCACCACCTATTGATCCCTTTGGCCGTATCCTCGGCTGTGCCGGAGAGCCCTTGGACAATTACAGCGGTTTTTTGGTGGG ACTCTATGAAGCTGATGGCCCCTTACAAACTGAAATTGGCGCGTTGCTTACCCTCGATCCGCTCACTGGGTCAGTGCCGC TTCCTCCTGGGGTGGTCAATGTCAACGAAGAGAACGCTAATCCCTTTGACCTTGGCATCACCGAGACCCTAGGCGACCCG GATTTTCGGGGTCAATTTAATTTTTTCCTACAACCTGGCCAAATTAATGTAGGGACTGTTTATATCTTGGTGATTCGGCC ACCGCTTGGCTCGTTCCTGGATGAGCGCCGGATCCAAATTCGGATTACAGCAGTTGCGCCAAATTCTTTTACCTATGTAG CCAACGCCCTCGATGGTCTTCCCCTGAGTCTCGATAATCCGACTCTAATGAGCCAGGAGATCACTGTTCCTAGAGCGGAA ACGAGTGCACTGGTTATCTTTACCACAGCGGTGATCTCAGTTTGCCAAAACGAAGCGATCGCCATCCAAAAAACCGCTGA CCGGGCCACTGTTGAACCAGGGGGCATTGCTGTTTATCGCCTGGGTATCCGCAATCACAGTACCACGACCCTAGAAAATG TCGAAGTGCGCGATCGCCTTCCCCTCGGCTTCCGACTTATCGAAGATTCCGTGCAAGGGATCATTGGCGAAAATCCGGCG ATTCTGGAAACCCAGGTAAATGGTCGAGATATTACCTTTACATTTCAAGAGCCCTTACCCGGTGGAACCCCTCCCGAAAA TAACCCCCTGGCCCGCATTGTCTATGCCGTAGAAATTACCCCCGATGCCCTGCGGGGTGATGGGCGCAATATTGCCTTTG TCGAAGGCGATCGCCAAGACAACAATTTCACTGTTCGGGATGGCCCCGCTGTTTACAACGTGGGGATTCGCAACGGCTTA ATTTCCGACCTCGGCACAATCATTGGGCGAGTCTTTGAAGACAAAAATTTCGATGGGGAACAACAGTATGGTGAACCCGG CATTCCCAACGCCGTGGTCTTTATGGAAAATGGCAACCGCATTGTCACCGATGAAAATGGCCTGTTTTCCGTCGCCAATG TTCTCCCCGGTTGGCATACGGGCGTTCTGGATCTGACCAGCGTCCCTGGCTACGCCCCCGCCCCCAACAAAAAATTCATT GCCGAAGACCGCACCTATAGCCGCACAGTGCGCCTCGAACCCGGTGGCATGGCCCGGATGAACTTTGCCGTAACGCCTTT AATCCCTGGAGAAGACGAATGA
Upstream 100 bases:
>100_bases GGCTAGCGTGAATGGCCAGTACCAAGTCCGCGTTCAATAAACGTCAAACATTCACTGGTCTTTACTTTTTTGGAGGCCTT TGTCGGCCAGAGTCTTTTTA
Downstream 100 bases:
>100_bases AAAAACGCTTCTCCGTTCCCCTAACAACATTAATTTTGGCCCTCAGCGGTTGGTTTACCGAAGTAACGGCCCAAACGCCA ACGGTGACAACGGCTGAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Conserved Domain Protein; OmpA Family Outer Membrane Protein
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MPNFLDHSRLILKRSPLAIALVSVGLNLGMPLVLAQSLETVENITLFNRAEASYQIEENGPAANITSNQVILGSGNPPPP PPPIDPFGRILGCAGEPLDNYSGFLVGLYEADGPLQTEIGALLTLDPLTGSVPLPPGVVNVNEENANPFDLGITETLGDP DFRGQFNFFLQPGQINVGTVYILVIRPPLGSFLDERRIQIRITAVAPNSFTYVANALDGLPLSLDNPTLMSQEITVPRAE TSALVIFTTAVISVCQNEAIAIQKTADRATVEPGGIAVYRLGIRNHSTTTLENVEVRDRLPLGFRLIEDSVQGIIGENPA ILETQVNGRDITFTFQEPLPGGTPPENNPLARIVYAVEITPDALRGDGRNIAFVEGDRQDNNFTVRDGPAVYNVGIRNGL ISDLGTIIGRVFEDKNFDGEQQYGEPGIPNAVVFMENGNRIVTDENGLFSVANVLPGWHTGVLDLTSVPGYAPAPNKKFI AEDRTYSRTVRLEPGGMARMNFAVTPLIPGEDE
Sequences:
>Translated_513_residues MPNFLDHSRLILKRSPLAIALVSVGLNLGMPLVLAQSLETVENITLFNRAEASYQIEENGPAANITSNQVILGSGNPPPP PPPIDPFGRILGCAGEPLDNYSGFLVGLYEADGPLQTEIGALLTLDPLTGSVPLPPGVVNVNEENANPFDLGITETLGDP DFRGQFNFFLQPGQINVGTVYILVIRPPLGSFLDERRIQIRITAVAPNSFTYVANALDGLPLSLDNPTLMSQEITVPRAE TSALVIFTTAVISVCQNEAIAIQKTADRATVEPGGIAVYRLGIRNHSTTTLENVEVRDRLPLGFRLIEDSVQGIIGENPA ILETQVNGRDITFTFQEPLPGGTPPENNPLARIVYAVEITPDALRGDGRNIAFVEGDRQDNNFTVRDGPAVYNVGIRNGL ISDLGTIIGRVFEDKNFDGEQQYGEPGIPNAVVFMENGNRIVTDENGLFSVANVLPGWHTGVLDLTSVPGYAPAPNKKFI AEDRTYSRTVRLEPGGMARMNFAVTPLIPGEDE >Mature_512_residues PNFLDHSRLILKRSPLAIALVSVGLNLGMPLVLAQSLETVENITLFNRAEASYQIEENGPAANITSNQVILGSGNPPPPP PPIDPFGRILGCAGEPLDNYSGFLVGLYEADGPLQTEIGALLTLDPLTGSVPLPPGVVNVNEENANPFDLGITETLGDPD FRGQFNFFLQPGQINVGTVYILVIRPPLGSFLDERRIQIRITAVAPNSFTYVANALDGLPLSLDNPTLMSQEITVPRAET SALVIFTTAVISVCQNEAIAIQKTADRATVEPGGIAVYRLGIRNHSTTTLENVEVRDRLPLGFRLIEDSVQGIIGENPAI LETQVNGRDITFTFQEPLPGGTPPENNPLARIVYAVEITPDALRGDGRNIAFVEGDRQDNNFTVRDGPAVYNVGIRNGLI SDLGTIIGRVFEDKNFDGEQQYGEPGIPNAVVFMENGNRIVTDENGLFSVANVLPGWHTGVLDLTSVPGYAPAPNKKFIA EDRTYSRTVRLEPGGMARMNFAVTPLIPGEDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55308; Mature: 55177
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNFLDHSRLILKRSPLAIALVSVGLNLGMPLVLAQSLETVENITLFNRAEASYQIEENG CCCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEECCC PAANITSNQVILGSGNPPPPPPPIDPFGRILGCAGEPLDNYSGFLVGLYEADGPLQTEIG CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHCCC ALLTLDPLTGSVPLPPGVVNVNEENANPFDLGITETLGDPDFRGQFNFFLQPGQINVGTV EEEEECCCCCCCCCCCCEEEECCCCCCEEECCCHHHCCCCCCCCCEEEEEECCEEEEEEE YILVIRPPLGSFLDERRIQIRITAVAPNSFTYVANALDGLPLSLDNPTLMSQEITVPRAE EEEEECCCHHHHHCCCEEEEEEEEECCCCEEEEEHHHCCCCEECCCCCEEECEEECCCCC TSALVIFTTAVISVCQNEAIAIQKTADRATVEPGGIAVYRLGIRNHSTTTLENVEVRDRL CCEEEEEHHHHHHHHCCCEEEEEECCCCCEECCCCEEEEEEECCCCCCCEEECEEEECCC PLGFRLIEDSVQGIIGENPAILETQVNGRDITFTFQEPLPGGTPPENNPLARIVYAVEIT CCCEEEHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEC PDALRGDGRNIAFVEGDRQDNNFTVRDGPAVYNVGIRNGLISDLGTIIGRVFEDKNFDGE HHHHCCCCCEEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCH QQYGEPGIPNAVVFMENGNRIVTDENGLFSVANVLPGWHTGVLDLTSVPGYAPAPNKKFI HHCCCCCCCEEEEEEECCCEEEECCCCCEEHHHHCCCCCCCEEEECCCCCCCCCCCCCEE AEDRTYSRTVRLEPGGMARMNFAVTPLIPGEDE ECCCCEEEEEEECCCCCEEEEEEEEECCCCCCC >Mature Secondary Structure PNFLDHSRLILKRSPLAIALVSVGLNLGMPLVLAQSLETVENITLFNRAEASYQIEENG CCCCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEECCC PAANITSNQVILGSGNPPPPPPPIDPFGRILGCAGEPLDNYSGFLVGLYEADGPLQTEIG CCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHCCC ALLTLDPLTGSVPLPPGVVNVNEENANPFDLGITETLGDPDFRGQFNFFLQPGQINVGTV EEEEECCCCCCCCCCCCEEEECCCCCCEEECCCHHHCCCCCCCCCEEEEEECCEEEEEEE YILVIRPPLGSFLDERRIQIRITAVAPNSFTYVANALDGLPLSLDNPTLMSQEITVPRAE EEEEECCCHHHHHCCCEEEEEEEEECCCCEEEEEHHHCCCCEECCCCCEEECEEECCCCC TSALVIFTTAVISVCQNEAIAIQKTADRATVEPGGIAVYRLGIRNHSTTTLENVEVRDRL CCEEEEEHHHHHHHHCCCEEEEEECCCCCEECCCCEEEEEEECCCCCCCEEECEEEECCC PLGFRLIEDSVQGIIGENPAILETQVNGRDITFTFQEPLPGGTPPENNPLARIVYAVEIT CCCEEEHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEEC PDALRGDGRNIAFVEGDRQDNNFTVRDGPAVYNVGIRNGLISDLGTIIGRVFEDKNFDGE HHHHCCCCCEEEEEECCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCH QQYGEPGIPNAVVFMENGNRIVTDENGLFSVANVLPGWHTGVLDLTSVPGYAPAPNKKFI HHCCCCCCCEEEEEEECCCEEEECCCCCEEHHHHCCCCCCCEEEECCCCCCCCCCCCCEE AEDRTYSRTVRLEPGGMARMNFAVTPLIPGEDE ECCCCEEEEEEECCCCCEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA