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The map label for this gene is psbA

Identifier: 170078762

GI number: 170078762

Start: 2245055

End: 2246137

Strand: Direct

Name: psbA

Synonym: SYNPCC7002_A2164

Alternate gene names: 170078762

Gene position: 2245055-2246137 (Clockwise)

Preceding gene: 170078760

Following gene: 170078763

Centisome position: 74.63

GC content: 48.11

Gene sequence:

>1083_bases
ATGACTACACTTCTACAACAGCAAGGCTCTGCCAATCTCTGGGAGCGCTTTTGCCAATGGGTTACAAGCACAGAAAATCG
TTTCTATGTAGGCTGGTTTGGGGTTTTAATGATTCCCACACTGTTGACCGCAACGATTTGTTTTATCCTGGCATTTGTTG
CTGCGCCCCCGGTTGATATTGATGGGATTCGCGAACCTGTTGCTGGCTCTTTGCTGTATGGCAACAATATTATTACCGCT
GCTGTGGTGCCGAGTTCTAATGCGATCGGTCTGCACTTTTATCCCATTTGGGATGCCGCAAATTTAGATGAATGGCTCTA
CAACGGTGGCCCCTACCAACTGATTGTGTTCCACTTCCTGCTTGGCATCTTTTCCTATATGGGGCGGGAATGGGAACTGT
CCTACCGTTTAGGAATGCGTCCGTGGATTGCGGTTGCCTATTCCGCACCGGTAGCGGCGGCGACTGCTGTGCTCTTGGTT
TATTCAATTGGCCAAGGATCTTTTTCCGATGGTTTACCGTTGGGCATCTCTGGCACCTTTAACTTCATGTTCGTGTTGCA
AGCTGAACATAATGTGTTGATGCATCCTTTCCATATGCTGGGGGTTGCAGGTGTCTTTGGTGGTGCGTTGTTTTCTGCGA
TGCACGGTTCCCTCGTGACCTCTTCTTTGATTCGGGAGACCACAGAAACGGAGTCCCAAAATAGTGGCTATCGTTTTGGT
CAAGAGGAAGAAACTTACAATATTGTGGCGGCCCATGGTTATTTTGGACGCTTGATCTTCCAATATGCTTCTTTTAATAA
TAGTCGCGCCCTCCACTTTTTCCTTGCTGCTTGGCCAGTGATTGGTATCTGGTTTGCCTCTTTAGCAGTGGCTTGTTTTG
CCTTTAACTTGAACGGGTTTAATTTCAACCAATCTCTGTTAGATTCCCAAGGACGGGTGATCAATACTTGGGCGGATATT
CTCAATCGGGCAAATCTGGGGATTGAGGCCATGCACGAACGCAATGTTCATAATTTCCCCCTCGATTTAGCAGCCGGAGA
TCAAGCGCCTGTCGCCCTCCAAGCCCCGGCAATTAATGGCTAA

Upstream 100 bases:

>100_bases
TCTTTTTTAGAAACGGTGCTATATAATCAAAAAGTGATTAAGCAATAAATCGATTGAGCGATTGCTTAGTCCCCAGTACT
TTAAACTGGTACATGCAATT

Downstream 100 bases:

>100_bases
CTGGAAGTTTGAATTTGGGATTGCAGTGGCATGATGATTGCTTTGAATAATCTTGGTTTGCTCTGAATCCTGAACGAAAA
ATATACTCTAAATGCTCTTA

Product: photosystem q(b) protein

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 3; Photosystem II protein D1 3

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTTLLQQQGSANLWERFCQWVTSTENRFYVGWFGVLMIPTLLTATICFILAFVAAPPVDIDGIREPVAGSLLYGNNIITA
AVVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFLLGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLV
YSIGQGSFSDGLPLGISGTFNFMFVLQAEHNVLMHPFHMLGVAGVFGGALFSAMHGSLVTSSLIRETTETESQNSGYRFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFASLAVACFAFNLNGFNFNQSLLDSQGRVINTWADI
LNRANLGIEAMHERNVHNFPLDLAAGDQAPVALQAPAING

Sequences:

>Translated_360_residues
MTTLLQQQGSANLWERFCQWVTSTENRFYVGWFGVLMIPTLLTATICFILAFVAAPPVDIDGIREPVAGSLLYGNNIITA
AVVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFLLGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLV
YSIGQGSFSDGLPLGISGTFNFMFVLQAEHNVLMHPFHMLGVAGVFGGALFSAMHGSLVTSSLIRETTETESQNSGYRFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFASLAVACFAFNLNGFNFNQSLLDSQGRVINTWADI
LNRANLGIEAMHERNVHNFPLDLAAGDQAPVALQAPAING
>Mature_359_residues
TTLLQQQGSANLWERFCQWVTSTENRFYVGWFGVLMIPTLLTATICFILAFVAAPPVDIDGIREPVAGSLLYGNNIITAA
VVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFLLGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLVY
SIGQGSFSDGLPLGISGTFNFMFVLQAEHNVLMHPFHMLGVAGVFGGALFSAMHGSLVTSSLIRETTETESQNSGYRFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFASLAVACFAFNLNGFNFNQSLLDSQGRVINTWADIL
NRANLGIEAMHERNVHNFPLDLAAGDQAPVALQAPAING

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA3_SYNP2 (B1XIP3)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001735400.1
- ProteinModelPortal:   B1XIP3
- SMR:   B1XIP3
- GeneID:   6057729
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2164
- HOGENOM:   HBG284766
- OMA:   HERNVHN
- ProtClustDB:   CLSK892431
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39618; Mature: 39486

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1c4e7d7c)-; HASH(0x1bd57364)-; HASH(0x1dda8070)-; HASH(0x1de217ac)-; HASH(0x1dde4050)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLLQQQGSANLWERFCQWVTSTENRFYVGWFGVLMIPTLLTATICFILAFVAAPPVDI
CCCCHHCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLLYGNNIITAAVVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFL
CCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHHHHH
LGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLVYSIGQGSFSDGLPLGISGTF
HHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
NFMFVLQAEHNVLMHPFHMLGVAGVFGGALFSAMHGSLVTSSLIRETTETESQNSGYRFG
EEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFASLAVACFAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
NFNQSLLDSQGRVINTWADILNRANLGIEAMHERNVHNFPLDLAAGDQAPVALQAPAING
CCCHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHCCCCCCCCEECCCCCCCEEEECCCCCH
>Mature Secondary Structure 
TTLLQQQGSANLWERFCQWVTSTENRFYVGWFGVLMIPTLLTATICFILAFVAAPPVDI
CCCHHCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGIREPVAGSLLYGNNIITAAVVPSSNAIGLHFYPIWDAANLDEWLYNGGPYQLIVFHFL
CCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEEEECCCCCHHHHHHCCCCHHHHHHHHH
LGIFSYMGREWELSYRLGMRPWIAVAYSAPVAAATAVLLVYSIGQGSFSDGLPLGISGTF
HHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCE
NFMFVLQAEHNVLMHPFHMLGVAGVFGGALFSAMHGSLVTSSLIRETTETESQNSGYRFG
EEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIGIWFASLAVACFAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
NFNQSLLDSQGRVINTWADILNRANLGIEAMHERNVHNFPLDLAAGDQAPVALQAPAING
CCCHHHHCCCCCEEHHHHHHHHHCCCCHHHHHHCCCCCCCCEECCCCCCCEEEECCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA