Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 170078706

GI number: 170078706

Start: 2182141

End: 2183214

Strand: Direct

Name: rlpA [C]

Synonym: SYNPCC7002_A2105

Alternate gene names: 170078706

Gene position: 2182141-2183214 (Clockwise)

Preceding gene: 170078705

Following gene: 170078707

Centisome position: 72.54

GC content: 56.8

Gene sequence:

>1074_bases
ATGGGCCTCGGCGCGGCAGCCGTTAACCTCGCTCCCTTTCAAACTAAGGCGATCGCCACCAGTGCCGACCCAGCCAAAAC
AGTGAGCCTCAACGCCCAACGGGAAACCCTGGCCGAAAATCCCCTGTGCCGTTTAGCGAGTACCCTGGATAAGGCCCCGG
AAGCGCAACTCGTGGCCGATACAAACCCGGAACAACTCACGCCCCAGGTCTCTAAGTGGTGGGCCTTTAATTTATTTCAG
CGATTTACCCAAAGTCTGGGCCTCGATTCTTTACTTCAGTTAGAAGTGCCGCTGGCCACTGCCCCCCTCGTCGCGGTGGT
GCCTACGCCGGAAGCAATACCCCAAGCTGCTGCTGAGTCTGGGGCACAGCTGATTAGCTACGACACAGACCGCCCCGCCA
CCAACCCCCAAAGCCATCAACTTTGGCTCCAGAATAAGCCCGTTGCCACCATTCGCTCCCAACAGGAGGCCGAACGGTTG
GCCCAACGCCTTGAACAACTGGTGGCGATGGCGGAATTTCAAGCCACGGCGATCGCCCCGACGTTACATGAAGACAAACC
GGCGATCGCCTTTGGTGATGACATTCTTTTAGTTGTGGACGAAACGATTACCCATGAGGACGTTCTCAACCATGAGATCC
TCGCCATTCAGTGGGCGAATAATCTCCGCCTCGCCCTCGGTGTGCCAGCGCTGGATATGGTCACCGCCCAGCAGCAAATG
TATCAGCTCGAAGAAACAGGTCAATCCCTCGAAGGACTAGCCTCCTGGTATGGCCCCTACTTTCACGGTCGCCTGACGGC
CAATGGGGAAACCTACGACCAATACGCCCTGACGGCGGCCCACCCTTCAATGCCCCTGAATACTTACCTCAAGGTCACCA
ACCTCAACAATGACCGGAGTGTAATCATCCGCCTTAATGACCGTGGCCCCTATATTCCGCCCCGGAGCCTGGACTTATCC
CTTGGTGCCGCCCGCTGTCTCAATAGTGTGGAAACAGGCGTAATTCCCTACAAGGCCACGATCATGGAACAAAAATCGCC
CGAACCAGAGGCGATCGCCCCTGATATGATCTAG

Upstream 100 bases:

>100_bases
AAACAATGGGTGCTGTCTGTGATTTTTAGCTTTTCTTTTATTCTGTATGCATTTACCGAAATTCACAGGATTATTATCTA
CTTTGGGCGCTTCCCTAGTG

Downstream 100 bases:

>100_bases
GTCTATCTTGAGTGCTGCCTAGGCCCGTTCCCTGACCATGCCAATTATTGAAGTCGATTCCCTCAGTAAAATCTATCCCG
TCGCCCTCAAGCAACCCGGT

Product: RlpA-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MGLGAAAVNLAPFQTKAIATSADPAKTVSLNAQRETLAENPLCRLASTLDKAPEAQLVADTNPEQLTPQVSKWWAFNLFQ
RFTQSLGLDSLLQLEVPLATAPLVAVVPTPEAIPQAAAESGAQLISYDTDRPATNPQSHQLWLQNKPVATIRSQQEAERL
AQRLEQLVAMAEFQATAIAPTLHEDKPAIAFGDDILLVVDETITHEDVLNHEILAIQWANNLRLALGVPALDMVTAQQQM
YQLEETGQSLEGLASWYGPYFHGRLTANGETYDQYALTAAHPSMPLNTYLKVTNLNNDRSVIIRLNDRGPYIPPRSLDLS
LGAARCLNSVETGVIPYKATIMEQKSPEPEAIAPDMI

Sequences:

>Translated_357_residues
MGLGAAAVNLAPFQTKAIATSADPAKTVSLNAQRETLAENPLCRLASTLDKAPEAQLVADTNPEQLTPQVSKWWAFNLFQ
RFTQSLGLDSLLQLEVPLATAPLVAVVPTPEAIPQAAAESGAQLISYDTDRPATNPQSHQLWLQNKPVATIRSQQEAERL
AQRLEQLVAMAEFQATAIAPTLHEDKPAIAFGDDILLVVDETITHEDVLNHEILAIQWANNLRLALGVPALDMVTAQQQM
YQLEETGQSLEGLASWYGPYFHGRLTANGETYDQYALTAAHPSMPLNTYLKVTNLNNDRSVIIRLNDRGPYIPPRSLDLS
LGAARCLNSVETGVIPYKATIMEQKSPEPEAIAPDMI
>Mature_356_residues
GLGAAAVNLAPFQTKAIATSADPAKTVSLNAQRETLAENPLCRLASTLDKAPEAQLVADTNPEQLTPQVSKWWAFNLFQR
FTQSLGLDSLLQLEVPLATAPLVAVVPTPEAIPQAAAESGAQLISYDTDRPATNPQSHQLWLQNKPVATIRSQQEAERLA
QRLEQLVAMAEFQATAIAPTLHEDKPAIAFGDDILLVVDETITHEDVLNHEILAIQWANNLRLALGVPALDMVTAQQQMY
QLEETGQSLEGLASWYGPYFHGRLTANGETYDQYALTAAHPSMPLNTYLKVTNLNNDRSVIIRLNDRGPYIPPRSLDLSL
GAARCLNSVETGVIPYKATIMEQKSPEPEAIAPDMI

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=81, Percent_Identity=46.9135802469136, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 38933; Mature: 38801

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGAAAVNLAPFQTKAIATSADPAKTVSLNAQRETLAENPLCRLASTLDKAPEAQLVAD
CCCCCCEEECCCCCHHEEECCCCCCEEEEECCHHHHHHCCHHHHHHHHHCCCCCCEEEEC
TNPEQLTPQVSKWWAFNLFQRFTQSLGLDSLLQLEVPLATAPLVAVVPTPEAIPQAAAES
CCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHC
GAQLISYDTDRPATNPQSHQLWLQNKPVATIRSQQEAERLAQRLEQLVAMAEFQATAIAP
CCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TLHEDKPAIAFGDDILLVVDETITHEDVLNHEILAIQWANNLRLALGVPALDMVTAQQQM
CCCCCCCCEEECCCEEEEEECCCCHHHHCCCEEEEEEECCCEEEEECCCHHHHHHHHHHH
YQLEETGQSLEGLASWYGPYFHGRLTANGETYDQYALTAAHPSMPLNTYLKVTNLNNDRS
HHHHHHHHHHHHHHHHCCCHHCCEEEECCCCCHHEEEEECCCCCCCCCEEEEEECCCCCE
VIIRLNDRGPYIPPRSLDLSLGAARCLNSVETGVIPYKATIMEQKSPEPEAIAPDMI
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLGAAAVNLAPFQTKAIATSADPAKTVSLNAQRETLAENPLCRLASTLDKAPEAQLVAD
CCCCCEEECCCCCHHEEECCCCCCEEEEECCHHHHHHCCHHHHHHHHHCCCCCCEEEEC
TNPEQLTPQVSKWWAFNLFQRFTQSLGLDSLLQLEVPLATAPLVAVVPTPEAIPQAAAES
CCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHC
GAQLISYDTDRPATNPQSHQLWLQNKPVATIRSQQEAERLAQRLEQLVAMAEFQATAIAP
CCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TLHEDKPAIAFGDDILLVVDETITHEDVLNHEILAIQWANNLRLALGVPALDMVTAQQQM
CCCCCCCCEEECCCEEEEEECCCCHHHHCCCEEEEEEECCCEEEEECCCHHHHHHHHHHH
YQLEETGQSLEGLASWYGPYFHGRLTANGETYDQYALTAAHPSMPLNTYLKVTNLNNDRS
HHHHHHHHHHHHHHHHCCCHHCCEEEECCCCCHHEEEEECCCCCCCCCEEEEEECCCCCE
VIIRLNDRGPYIPPRSLDLSLGAARCLNSVETGVIPYKATIMEQKSPEPEAIAPDMI
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]