| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078685
Identifier: 170078685
GI number: 170078685
Start: 2162302
End: 2163444
Strand: Reverse
Name: 170078685
Synonym: SYNPCC7002_A2082
Alternate gene names: NA
Gene position: 2163444-2162302 (Counterclockwise)
Preceding gene: 170078686
Following gene: 170078681
Centisome position: 71.92
GC content: 49.08
Gene sequence:
>1143_bases ATGGCCCAGTCTGTTCCGATCCTCAAACAAATCCAGGTTGCCCTTGCCGCAAAGGACTACAGCCAGATGCGTCAACTGCT GTTGCAATGGCAAAAAGTAGAGCCAAAAAATCCTTGGTTTCGCTTATATGTAGCGCGGTGGTATGAAGCGACAGAACAAT GGCAAAAGGCCGAAAAAGGTTATCGGCGGTTACTCAAAGGCGTTACTGTGCCCAAAGTGGTTACCCAAGCACGGCAGGGT TTGGCACGACTTGAAGCAAGAGCATTAGCTCTGACCCAGACGGCGATCGCCGAAGAAAAGGCTGCCCCCGGCGGAGAAGT TTATGGTCTGATGGTGTTAGAGCCCATTAGCCCCAAACAAAAGAAAACAGCCGCCCAATATTTCGCGACGGTATTACGCA CCGATGCCTACTCGGCGGGATTACAGCTGCCCCTGAAATCTTGGCGCTTATTCCGCACAGGTGCCTTGGGAGAACTCCGT TTTTTAAAGAAAGCCCTCACCCAGGGTAATATTCCCAGTTTTTGTCTCTCTTTGGCCCAGTTACAAAATATTCCGGTGAT CCAAGTCCAGACCATTGAACAACTCGATCCCCATTTGCTGCTCCGGGGCCTTGATGAAACCCAACAGGCCGTTGAATATA CAGTGCCTTGGTCAGAAATTTCCCAATGGGTAACGGGCATGTTGCCAATTTTTGAAGAGTCCCTAGAAAAAGACGGTCGC GGCAAACCCTATTACAAAACAAAAGTCCTTGATTATGCCCAATTCTGCGATTTACATTGGGGCGATCGCCAAGTGATTTT CCGGCTGAATGACCAGCACTACCAATTCCAGCAGGGATTATCTTTTCTCGAAGTAACCCAAAATCCCATTGAACAGCTCA GTAACCGCCGCAACTGGAATCAGATGCAACACCGTCTTACTGAGCACCTGAGCCATAGTCGAAAATGGTCAGACTTTAAG AGTTTCGCAAATAATGCCCGTGACTTTCCGGAACTGCTGCGTAAAATCCAACCTCAGGTGAATCTATTCCGCCAGGAAAC TCACCAAGATACCTATTGGGATCCGGCCTGGCACCTCTACAGCACAATTATTTTCGCCCATGGTGCCGAAACCCATTCTG AGGCGATCGCCCAAAAGAACTAA
Upstream 100 bases:
>100_bases CATTATTTGGGAGAGGGGCAATTATGCCCCTTTTTTTGTGGGGGAGAGTGGCTAGAATGAGGGAAATGTCAGAGGCGATC GCCTTTTTCTTTGTATTGCT
Downstream 100 bases:
>100_bases CGATTGATTTTGCTAACTTAAATAACCCTAAAAAGTCGGCACCGTATCAGTGCGCATATTGGGGTTACTGCCAGAACTGG AGTTGGGGTTGGTTGCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MAQSVPILKQIQVALAAKDYSQMRQLLLQWQKVEPKNPWFRLYVARWYEATEQWQKAEKGYRRLLKGVTVPKVVTQARQG LARLEARALALTQTAIAEEKAAPGGEVYGLMVLEPISPKQKKTAAQYFATVLRTDAYSAGLQLPLKSWRLFRTGALGELR FLKKALTQGNIPSFCLSLAQLQNIPVIQVQTIEQLDPHLLLRGLDETQQAVEYTVPWSEISQWVTGMLPIFEESLEKDGR GKPYYKTKVLDYAQFCDLHWGDRQVIFRLNDQHYQFQQGLSFLEVTQNPIEQLSNRRNWNQMQHRLTEHLSHSRKWSDFK SFANNARDFPELLRKIQPQVNLFRQETHQDTYWDPAWHLYSTIIFAHGAETHSEAIAQKN
Sequences:
>Translated_380_residues MAQSVPILKQIQVALAAKDYSQMRQLLLQWQKVEPKNPWFRLYVARWYEATEQWQKAEKGYRRLLKGVTVPKVVTQARQG LARLEARALALTQTAIAEEKAAPGGEVYGLMVLEPISPKQKKTAAQYFATVLRTDAYSAGLQLPLKSWRLFRTGALGELR FLKKALTQGNIPSFCLSLAQLQNIPVIQVQTIEQLDPHLLLRGLDETQQAVEYTVPWSEISQWVTGMLPIFEESLEKDGR GKPYYKTKVLDYAQFCDLHWGDRQVIFRLNDQHYQFQQGLSFLEVTQNPIEQLSNRRNWNQMQHRLTEHLSHSRKWSDFK SFANNARDFPELLRKIQPQVNLFRQETHQDTYWDPAWHLYSTIIFAHGAETHSEAIAQKN >Mature_379_residues AQSVPILKQIQVALAAKDYSQMRQLLLQWQKVEPKNPWFRLYVARWYEATEQWQKAEKGYRRLLKGVTVPKVVTQARQGL ARLEARALALTQTAIAEEKAAPGGEVYGLMVLEPISPKQKKTAAQYFATVLRTDAYSAGLQLPLKSWRLFRTGALGELRF LKKALTQGNIPSFCLSLAQLQNIPVIQVQTIEQLDPHLLLRGLDETQQAVEYTVPWSEISQWVTGMLPIFEESLEKDGRG KPYYKTKVLDYAQFCDLHWGDRQVIFRLNDQHYQFQQGLSFLEVTQNPIEQLSNRRNWNQMQHRLTEHLSHSRKWSDFKS FANNARDFPELLRKIQPQVNLFRQETHQDTYWDPAWHLYSTIIFAHGAETHSEAIAQKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44120; Mature: 43989
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQSVPILKQIQVALAAKDYSQMRQLLLQWQKVEPKNPWFRLYVARWYEATEQWQKAEKG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH YRRLLKGVTVPKVVTQARQGLARLEARALALTQTAIAEEKAAPGGEVYGLMVLEPISPKQ HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH KKTAAQYFATVLRTDAYSAGLQLPLKSWRLFRTGALGELRFLKKALTQGNIPSFCLSLAQ HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH LQNIPVIQVQTIEQLDPHLLLRGLDETQQAVEYTVPWSEISQWVTGMLPIFEESLEKDGR HCCCCEEEEHHHHHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC GKPYYKTKVLDYAQFCDLHWGDRQVIFRLNDQHYQFQQGLSFLEVTQNPIEQLSNRRNWN CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHCCCCHH QMQHRLTEHLSHSRKWSDFKSFANNARDFPELLRKIQPQVNLFRQETHQDTYWDPAWHLY HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHH STIIFAHGAETHSEAIAQKN HHHHHHCCCCHHHHHHHCCC >Mature Secondary Structure AQSVPILKQIQVALAAKDYSQMRQLLLQWQKVEPKNPWFRLYVARWYEATEQWQKAEKG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH YRRLLKGVTVPKVVTQARQGLARLEARALALTQTAIAEEKAAPGGEVYGLMVLEPISPKQ HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH KKTAAQYFATVLRTDAYSAGLQLPLKSWRLFRTGALGELRFLKKALTQGNIPSFCLSLAQ HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH LQNIPVIQVQTIEQLDPHLLLRGLDETQQAVEYTVPWSEISQWVTGMLPIFEESLEKDGR HCCCCEEEEHHHHHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC GKPYYKTKVLDYAQFCDLHWGDRQVIFRLNDQHYQFQQGLSFLEVTQNPIEQLSNRRNWN CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHCCCCHH QMQHRLTEHLSHSRKWSDFKSFANNARDFPELLRKIQPQVNLFRQETHQDTYWDPAWHLY HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHH STIIFAHGAETHSEAIAQKN HHHHHHCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA