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The map label for this gene is rnd [H]

Identifier: 170078658

GI number: 170078658

Start: 2139069

End: 2139692

Strand: Reverse

Name: rnd [H]

Synonym: SYNPCC7002_A2054

Alternate gene names: 170078658

Gene position: 2139692-2139069 (Counterclockwise)

Preceding gene: 170078659

Following gene: 170078655

Centisome position: 71.13

GC content: 48.72

Gene sequence:

>624_bases
ATGGATCAATTTGCACTTTTTGACCAAGACCTCAGCCTCGAAATTTTAGAACGCTACCTCAAATCTGGGGCGATCGCCAT
CGATACCGAAACCATGGGCCTCAACCCTTACCGCGATCGCCTTTGTCTGGTGCAACTCTGTGATGATGCTGGCTATGTCA
GTGCGATTCGCATCGCCCAGGGTCAGACCGCCGCTCCCAACTTAAAAGCCCTAATGGAAGCCCCTGAAATCACAAAAGTT
TTTCACTTTGCGCGGTTCGATCTTGCCCAACTACGCCATGTCTTTGGCATCGAAACTCGGCCCTTTTTCTGTACTAAAAT
CGCCAGCAAATTAGGCCGCACCTATACCTCTAGCCATGGCCTAAAAGCGTTGGTCAAAGAATTAATGGGCGTTGAACTGG
ACAAATCGGCCCAGAGTTCTGATTGGGGAAATGTAGCAGTCCTCAGCGCGGAACAGCTTAAATATGCCTCAAACGATGTG
CGCTATCTCATTCCCATGATGCGCAAACTAACAGCTATGCTCCAGCGCGAAAACCGTTGGCCTCTGATGGAAGAATGTCT
CCGTTGTCTCCCCACCTTTATCAGTTTAGATCTTGCCTTTTATGACAATGTTTTCGAGCACTAA

Upstream 100 bases:

>100_bases
ACCGAGGCCGAATTGGACTTCCTTGCCCAACCAGGTTCCTCCTTTTAACGGGTGCTAAAACGACTGCGCCATTTTTTTAT
TACAAACTTAGACCGAAACC

Downstream 100 bases:

>100_bases
AAGCGTTCGTTAGTTACTGGCTTCAGCGGTTACTTCTGCAGTTTTTTCGGGTTCAATGATCCGACGGATTTCTGAGTAAA
AAGCAGTCTGTAAAACGCCT

Product: putative ribonuclease D

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEAPEITKV
FHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHGLKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDV
RYLIPMMRKLTAMLQRENRWPLMEECLRCLPTFISLDLAFYDNVFEH

Sequences:

>Translated_207_residues
MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEAPEITKV
FHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHGLKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDV
RYLIPMMRKLTAMLQRENRWPLMEECLRCLPTFISLDLAFYDNVFEH
>Mature_207_residues
MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQGQTAAPNLKALMEAPEITKV
FHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHGLKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDV
RYLIPMMRKLTAMLQRENRWPLMEECLRCLPTFISLDLAFYDNVFEH

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=148, Percent_Identity=39.1891891891892, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 23553; Mature: 23553

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ
CCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHEEECC
GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCC
LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
PLMEECLRCLPTFISLDLAFYDNVFEH
CHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQFALFDQDLSLEILERYLKSGAIAIDTETMGLNPYRDRLCLVQLCDDAGYVSAIRIAQ
CCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHEEECC
GQTAAPNLKALMEAPEITKVFHFARFDLAQLRHVFGIETRPFFCTKIASKLGRTYTSSHG
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHCCCCC
LKALVKELMGVELDKSAQSSDWGNVAVLSAEQLKYASNDVRYLIPMMRKLTAMLQRENRW
HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
PLMEECLRCLPTFISLDLAFYDNVFEH
CHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3041371; 9097040; 9278503; 8107670 [H]