| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078644
Identifier: 170078644
GI number: 170078644
Start: 2121297
End: 2121977
Strand: Reverse
Name: 170078644
Synonym: SYNPCC7002_A2040
Alternate gene names: NA
Gene position: 2121977-2121297 (Counterclockwise)
Preceding gene: 170078647
Following gene: 170078643
Centisome position: 70.54
GC content: 43.17
Gene sequence:
>681_bases ATGGTTGCTTCGATGAAGAATGCGCGCCGGAAAGAGGCGATCGCCCCTTGGGTTCCGTCCCAGTGGGAAGCGTACCAACA ACAGCGGGATTTGCCCACCGATGATCTTAATAAACAAAAGCTGTATTTTTATCAAAATTCATTATTAGTTGAAATGGGAA AAGAAGGTCTGAATCATGCTTCTGTGAGTGATTTATTCACAATGTTATTTTTCGTGATTGCATCCCATTTTCAGCTTAAA CTACGATCCTTTGGTCGTTGTCTGCTAGAAAAGCCGACTCAAAAAATTGCGGCTTCTCCGGATTTAATGCTTTTTCTTGG GGAAGATTATCCGGTTTGGAAACAAGGCGATCGCCGTTATTTAAACTTAGATGAATGGCGCGTGCCAGATTTGGTGGGTG AAATTTCTGACACGACAATTTTCCATGATTTAGACCGTAAAAAAGAAATTTACGCTGCGTTAGGTATCCCTGAATATTGG GTGATTGATATCCAGGCTCAACGGTTTTTTCTCTTAGTTTTAAATGGGGCTGGACGCTATGAATCCGTTGAAACATCTCA GGTTTTAAAGGACTTGCCGAAAGCAATATTAGAAGAAGCCCTAGAACGTGTTGCCTCAGACGGCAATGCCCAGGTGGCCC AGTGGTTTATGGGACAATTGCAAGTCGAACAGCCCCAATGA
Upstream 100 bases:
>100_bases TATATTTTGACTGAATCGAGTTTGTATCCCCCTAGTTTAAAAGGATGGCACGAAATTCAGATCTTACAATGGAGCTAATC AATGCTCTGGAGGATAACCG
Downstream 100 bases:
>100_bases TGTGGTTTTAGTTTTGGGAAATTGAAGGATTATTCGCTTTAATGGGGAATAATTGTTGTCAATCCAAAACTTTCTATGGC TAGCGTAACGTTCGAGCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MVASMKNARRKEAIAPWVPSQWEAYQQQRDLPTDDLNKQKLYFYQNSLLVEMGKEGLNHASVSDLFTMLFFVIASHFQLK LRSFGRCLLEKPTQKIAASPDLMLFLGEDYPVWKQGDRRYLNLDEWRVPDLVGEISDTTIFHDLDRKKEIYAALGIPEYW VIDIQAQRFFLLVLNGAGRYESVETSQVLKDLPKAILEEALERVASDGNAQVAQWFMGQLQVEQPQ
Sequences:
>Translated_226_residues MVASMKNARRKEAIAPWVPSQWEAYQQQRDLPTDDLNKQKLYFYQNSLLVEMGKEGLNHASVSDLFTMLFFVIASHFQLK LRSFGRCLLEKPTQKIAASPDLMLFLGEDYPVWKQGDRRYLNLDEWRVPDLVGEISDTTIFHDLDRKKEIYAALGIPEYW VIDIQAQRFFLLVLNGAGRYESVETSQVLKDLPKAILEEALERVASDGNAQVAQWFMGQLQVEQPQ >Mature_226_residues MVASMKNARRKEAIAPWVPSQWEAYQQQRDLPTDDLNKQKLYFYQNSLLVEMGKEGLNHASVSDLFTMLFFVIASHFQLK LRSFGRCLLEKPTQKIAASPDLMLFLGEDYPVWKQGDRRYLNLDEWRVPDLVGEISDTTIFHDLDRKKEIYAALGIPEYW VIDIQAQRFFLLVLNGAGRYESVETSQVLKDLPKAILEEALERVASDGNAQVAQWFMGQLQVEQPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26116; Mature: 26116
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVASMKNARRKEAIAPWVPSQWEAYQQQRDLPTDDLNKQKLYFYQNSLLVEMGKEGLNHA CCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCC SVSDLFTMLFFVIASHFQLKLRSFGRCLLEKPTQKIAASPDLMLFLGEDYPVWKQGDRRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCCCCCCCEE LNLDEWRVPDLVGEISDTTIFHDLDRKKEIYAALGIPEYWVIDIQAQRFFLLVLNGAGRY ECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCC ESVETSQVLKDLPKAILEEALERVASDGNAQVAQWFMGQLQVEQPQ CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVASMKNARRKEAIAPWVPSQWEAYQQQRDLPTDDLNKQKLYFYQNSLLVEMGKEGLNHA CCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCC SVSDLFTMLFFVIASHFQLKLRSFGRCLLEKPTQKIAASPDLMLFLGEDYPVWKQGDRRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCCCCCCCEE LNLDEWRVPDLVGEISDTTIFHDLDRKKEIYAALGIPEYWVIDIQAQRFFLLVLNGAGRY ECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCC ESVETSQVLKDLPKAILEEALERVASDGNAQVAQWFMGQLQVEQPQ CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA