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The map label for this gene is lytR [H]

Identifier: 170078632

GI number: 170078632

Start: 2108469

End: 2109932

Strand: Direct

Name: lytR [H]

Synonym: SYNPCC7002_A2028

Alternate gene names: 170078632

Gene position: 2108469-2109932 (Clockwise)

Preceding gene: 170078631

Following gene: 170078633

Centisome position: 70.09

GC content: 51.5

Gene sequence:

>1464_bases
GTGCCTGCAACAAAATCGTCCCTAGCAAATCAACGTCTATCGGCCAAAGCAACCCAAAAACAAAAAAACGCTAAAGCTAA
CCCTTTTCAGAAGTCGTCGTCGAAAAAACGGCGGCCCCTTTCGACTTGGCACTGGTTAATGATTTGGTGTGGTTTGACGG
GCGTTTCGATTGTGTCTGCTACGGCGGGTGCTTTATTGGCGGTGTCCCTCTCCTCAACCCCCCTGCGCCAAACACCCCTC
GCCCCGGAAGAACTCAGCGTCTTCTCCCAGGATGAGGCGATCGCCAAACAATCCCTCCGTTTACCAGAACTGACGCGCCC
CGTAAATATTCTGCTGTTGGGGACAAAAGTGCTCACCTCTGAAGTAGATGATGGCACCAATGAAGACCTTGGTTACCACG
CCCTCGTGAATTCCTTTGAAGGGCTGGCCGATACGATGCTGTTATTGCGCTTTGATCCCGCCGACAAACAAATCTCAATT
CTCTCCATTCCCCGGGACACCCAGGCCAACATCGAAGGCTATGGTCTCTCGAAAATTAACCATGCCAATGCCTACGGTGG
TGCAGTCCTTTCCGCCAAAACCGTTGGGGATCTTCTGGGTGGCGTCGAAATTGACCGCTACATCCGCGTCAACGTCCAGG
GCATTGGCAAACTCATTGATGCCCTCGGTGGGGTCACAGTCTACGTCCCGAAGGACATGAAATACCAGGACGATAGCCAG
CGTCTCTACATCAACCTCAAGGAAGGAGAACAGCACCTTAATGGCGACGAAGCCCTCCAATTTTTGCGGTTCCGCTATGA
CGAATATGGCGATATTGGCCGTGTTCAGCGCCAACAGACCTTAATCCGTGCTGTTCTAGAGCAAAGTTTAACTCCCAGTA
ACTTGGTGAAATTTCCCCAGGTCATGTCGATTATTCAATCCCATATTGATACGAATATGAGCGTTCAAGAACTGATTGCC
CTCGCTGGCTTTGGTTCTCAGATCGAGCGCAGTAATATTCAGATGGTGATGCTCCCAGGGGAATTTAGCGGCGACGGCAG
AAACGGCAGCACAAGCTATTGGTTACCCCACCGCAGCCGCATTAGTCGGGTGATGGCCCAGCATTTTGACATCCAGACCG
ATTACGCCAGCAATTTAGACTTTCTCTCCCCTGGGGATGTGCGCATTGCAATCCAAGACAGTACGGGGAATTCTCAAGCT
GTGCGATCGCTCCTCCAGCGTTTAAACGAAGCGGGTTACAGTCGGGTTAGTATCGCCCAGGACTGGTCAGAACCGTTGGA
AAACACGCGCATCGTGGCCCAAAAAGGAGATGATCTAGCAGCTTCCGAAATTCGCGCAAACCTAGGATTTGGGGAAGTGC
GAGTAGAAAGTACCGGAGTATTAAATTCCGACATTACGATTCAACTCGGCCGCGACTGGCTTACCCTCGCAAATAACCTT
CCCGGTCAAACCACAGTCAATTAG

Upstream 100 bases:

>100_bases
GAAGTAAAACTCACCAAAAGTGGAACCTCTGGTTTAGCATAGCTATCAAAGTATTTCGTCCCGCAATTTTTAGTGTGGTC
TTTCCGGTGTGAGGAAACCT

Downstream 100 bases:

>100_bases
AGTAATTTAACGATTTCAAATATTGTTATGACAGATGTCCTAAATTTCTTATTTTTGCAAGTTACGAAGCCACAAATAGT
TCACTAAACTTGATTGCTGC

Product: cell envelope-related function transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MPATKSSLANQRLSAKATQKQKNAKANPFQKSSSKKRRPLSTWHWLMIWCGLTGVSIVSATAGALLAVSLSSTPLRQTPL
APEELSVFSQDEAIAKQSLRLPELTRPVNILLLGTKVLTSEVDDGTNEDLGYHALVNSFEGLADTMLLLRFDPADKQISI
LSIPRDTQANIEGYGLSKINHANAYGGAVLSAKTVGDLLGGVEIDRYIRVNVQGIGKLIDALGGVTVYVPKDMKYQDDSQ
RLYINLKEGEQHLNGDEALQFLRFRYDEYGDIGRVQRQQTLIRAVLEQSLTPSNLVKFPQVMSIIQSHIDTNMSVQELIA
LAGFGSQIERSNIQMVMLPGEFSGDGRNGSTSYWLPHRSRISRVMAQHFDIQTDYASNLDFLSPGDVRIAIQDSTGNSQA
VRSLLQRLNEAGYSRVSIAQDWSEPLENTRIVAQKGDDLAASEIRANLGFGEVRVESTGVLNSDITIQLGRDWLTLANNL
PGQTTVN

Sequences:

>Translated_487_residues
MPATKSSLANQRLSAKATQKQKNAKANPFQKSSSKKRRPLSTWHWLMIWCGLTGVSIVSATAGALLAVSLSSTPLRQTPL
APEELSVFSQDEAIAKQSLRLPELTRPVNILLLGTKVLTSEVDDGTNEDLGYHALVNSFEGLADTMLLLRFDPADKQISI
LSIPRDTQANIEGYGLSKINHANAYGGAVLSAKTVGDLLGGVEIDRYIRVNVQGIGKLIDALGGVTVYVPKDMKYQDDSQ
RLYINLKEGEQHLNGDEALQFLRFRYDEYGDIGRVQRQQTLIRAVLEQSLTPSNLVKFPQVMSIIQSHIDTNMSVQELIA
LAGFGSQIERSNIQMVMLPGEFSGDGRNGSTSYWLPHRSRISRVMAQHFDIQTDYASNLDFLSPGDVRIAIQDSTGNSQA
VRSLLQRLNEAGYSRVSIAQDWSEPLENTRIVAQKGDDLAASEIRANLGFGEVRVESTGVLNSDITIQLGRDWLTLANNL
PGQTTVN
>Mature_486_residues
PATKSSLANQRLSAKATQKQKNAKANPFQKSSSKKRRPLSTWHWLMIWCGLTGVSIVSATAGALLAVSLSSTPLRQTPLA
PEELSVFSQDEAIAKQSLRLPELTRPVNILLLGTKVLTSEVDDGTNEDLGYHALVNSFEGLADTMLLLRFDPADKQISIL
SIPRDTQANIEGYGLSKINHANAYGGAVLSAKTVGDLLGGVEIDRYIRVNVQGIGKLIDALGGVTVYVPKDMKYQDDSQR
LYINLKEGEQHLNGDEALQFLRFRYDEYGDIGRVQRQQTLIRAVLEQSLTPSNLVKFPQVMSIIQSHIDTNMSVQELIAL
AGFGSQIERSNIQMVMLPGEFSGDGRNGSTSYWLPHRSRISRVMAQHFDIQTDYASNLDFLSPGDVRIAIQDSTGNSQAV
RSLLQRLNEAGYSRVSIAQDWSEPLENTRIVAQKGDDLAASEIRANLGFGEVRVESTGVLNSDITIQLGRDWLTLANNLP
GQTTVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53497; Mature: 53366

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATKSSLANQRLSAKATQKQKNAKANPFQKSSSKKRRPLSTWHWLMIWCGLTGVSIVSA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TAGALLAVSLSSTPLRQTPLAPEELSVFSQDEAIAKQSLRLPELTRPVNILLLGTKVLTS
CCCEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
EVDDGTNEDLGYHALVNSFEGLADTMLLLRFDPADKQISILSIPRDTQANIEGYGLSKIN
CCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
HANAYGGAVLSAKTVGDLLGGVEIDRYIRVNVQGIGKLIDALGGVTVYVPKDMKYQDDSQ
CCCCCCCCEEEHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCCCC
RLYINLKEGEQHLNGDEALQFLRFRYDEYGDIGRVQRQQTLIRAVLEQSLTPSNLVKFPQ
EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VMSIIQSHIDTNMSVQELIALAGFGSQIERSNIQMVMLPGEFSGDGRNGSTSYWLPHRSR
HHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCCCEEEEECCCCCCCCCCCCCEEECCCHHH
ISRVMAQHFDIQTDYASNLDFLSPGDVRIAIQDSTGNSQAVRSLLQRLNEAGYSRVSIAQ
HHHHHHHHCCCCCCHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHH
DWSEPLENTRIVAQKGDDLAASEIRANLGFGEVRVESTGVLNSDITIQLGRDWLTLANNL
HHHHHHHCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCC
PGQTTVN
CCCCCCC
>Mature Secondary Structure 
PATKSSLANQRLSAKATQKQKNAKANPFQKSSSKKRRPLSTWHWLMIWCGLTGVSIVSA
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
TAGALLAVSLSSTPLRQTPLAPEELSVFSQDEAIAKQSLRLPELTRPVNILLLGTKVLTS
CCCEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
EVDDGTNEDLGYHALVNSFEGLADTMLLLRFDPADKQISILSIPRDTQANIEGYGLSKIN
CCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC
HANAYGGAVLSAKTVGDLLGGVEIDRYIRVNVQGIGKLIDALGGVTVYVPKDMKYQDDSQ
CCCCCCCCEEEHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCCCC
RLYINLKEGEQHLNGDEALQFLRFRYDEYGDIGRVQRQQTLIRAVLEQSLTPSNLVKFPQ
EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VMSIIQSHIDTNMSVQELIALAGFGSQIERSNIQMVMLPGEFSGDGRNGSTSYWLPHRSR
HHHHHHHHHCCCCCHHHHHHHHCCCCHHCCCCCEEEEECCCCCCCCCCCCCEEECCCHHH
ISRVMAQHFDIQTDYASNLDFLSPGDVRIAIQDSTGNSQAVRSLLQRLNEAGYSRVSIAQ
HHHHHHHHCCCCCCHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEHHH
DWSEPLENTRIVAQKGDDLAASEIRANLGFGEVRVESTGVLNSDITIQLGRDWLTLANNL
HHHHHHHCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCC
PGQTTVN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]