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The map label for this gene is ytfC [H]

Identifier: 170078591

GI number: 170078591

Start: 2069770

End: 2070294

Strand: Direct

Name: ytfC [H]

Synonym: SYNPCC7002_A1987

Alternate gene names: 170078591

Gene position: 2069770-2070294 (Clockwise)

Preceding gene: 170078590

Following gene: 170078592

Centisome position: 68.81

GC content: 49.52

Gene sequence:

>525_bases
ATGCGAGAAATTTGGCTTAGTTTTGGGGTCATCGTGATCTGTGGGGTTATGTTAATCTTGTCTGCGGTCTTTAATGGGGC
CAGCCAAACGGCGATCGCCGCTGAACTCAACTCAACCAGTCCAGTGGTACAAATTGCCGCCAATCCCACCGAGGAACTCA
AAAATATGGATATTGATTTATCGAAAGCAACAACGACCGAATCTGGTCTTCAGTACATCGACGAAGTTGTTGGCGAAGGA
GCGTCCCCCATGGAAGGGGAAATGGTGACGGTACATTACACCGGCAAACTCACCAATGGCAAAGTATTCGATAGCTCCGT
CAAGCGCAATGAACCCTTTTCTTTTGTGATCGGTGTTGGGCAAGTGATTAAAGGTTGGGACGAAGGTGTCATTACCATGA
AGCCTGGTGGTAAGCGCACGCTGATTATTCCCGCGGAACTGGGCTATGGTTCCCGTGGTGCTGGTGGTGTGATCCCCCCC
AATGCCACTTTGATCTTTGATGTGGAATTGCTTGGGATTCGCTAG

Upstream 100 bases:

>100_bases
GCGGCAGGTGCGCGAACTGGAAAATAAGCAGTGGCGATAGGCCCGGTAAGATAGGAAAGCAATGCACACTGTTTGTAAAT
CTGGGAGTGAATGAACATCC

Downstream 100 bases:

>100_bases
GCTAACCACGATTGATATTGCTACAAAAATCCCCCATGCCAAACGGAAAATGGGGGGTTATTTTTTTGAATTGGCGGTAA
TGATCAAACGCAAATTTATT

Product: FKBP-type peptidyl-prolyl cis-trans isomerase

Products: NA

Alternate protein names: Peptidyl-prolyl cis-trans isomerase; PPIase; Rotamase [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MREIWLSFGVIVICGVMLILSAVFNGASQTAIAAELNSTSPVVQIAANPTEELKNMDIDLSKATTTESGLQYIDEVVGEG
ASPMEGEMVTVHYTGKLTNGKVFDSSVKRNEPFSFVIGVGQVIKGWDEGVITMKPGGKRTLIIPAELGYGSRGAGGVIPP
NATLIFDVELLGIR

Sequences:

>Translated_174_residues
MREIWLSFGVIVICGVMLILSAVFNGASQTAIAAELNSTSPVVQIAANPTEELKNMDIDLSKATTTESGLQYIDEVVGEG
ASPMEGEMVTVHYTGKLTNGKVFDSSVKRNEPFSFVIGVGQVIKGWDEGVITMKPGGKRTLIIPAELGYGSRGAGGVIPP
NATLIFDVELLGIR
>Mature_174_residues
MREIWLSFGVIVICGVMLILSAVFNGASQTAIAAELNSTSPVVQIAANPTEELKNMDIDLSKATTTESGLQYIDEVVGEG
ASPMEGEMVTVHYTGKLTNGKVFDSSVKRNEPFSFVIGVGQVIKGWDEGVITMKPGGKRTLIIPAELGYGSRGAGGVIPP
NATLIFDVELLGIR

Specific function: PPIases accelerate the folding of proteins [H]

COG id: COG0545

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 1

Gene ontology:

Cell location: Cytoplasm And Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Homo sapiens, GI206725530, Length=89, Percent_Identity=58.4269662921348, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI17149844, Length=89, Percent_Identity=58.4269662921348, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI17149842, Length=89, Percent_Identity=58.4269662921348, Blast_Score=112, Evalue=1e-25,
Organism=Homo sapiens, GI224809329, Length=146, Percent_Identity=45.2054794520548, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI224809327, Length=146, Percent_Identity=45.2054794520548, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI4758384, Length=146, Percent_Identity=45.2054794520548, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI224809331, Length=146, Percent_Identity=45.2054794520548, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI4758380, Length=97, Percent_Identity=53.6082474226804, Blast_Score=103, Evalue=6e-23,
Organism=Homo sapiens, GI17149836, Length=97, Percent_Identity=50.5154639175258, Blast_Score=103, Evalue=7e-23,
Organism=Homo sapiens, GI4503725, Length=97, Percent_Identity=50.5154639175258, Blast_Score=103, Evalue=7e-23,
Organism=Homo sapiens, GI4503727, Length=142, Percent_Identity=40.1408450704225, Blast_Score=94, Evalue=5e-20,
Organism=Homo sapiens, GI4503729, Length=92, Percent_Identity=50, Blast_Score=94, Evalue=7e-20,
Organism=Homo sapiens, GI192448443, Length=96, Percent_Identity=48.9583333333333, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI8923659, Length=92, Percent_Identity=47.8260869565217, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI206725547, Length=92, Percent_Identity=46.7391304347826, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI33469985, Length=88, Percent_Identity=43.1818181818182, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI31317231, Length=93, Percent_Identity=47.3118279569892, Blast_Score=81, Evalue=6e-16,
Organism=Homo sapiens, GI7706131, Length=88, Percent_Identity=38.6363636363636, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI150010552, Length=127, Percent_Identity=33.8582677165354, Blast_Score=73, Evalue=1e-13,
Organism=Escherichia coli, GI87082390, Length=110, Percent_Identity=55.4545454545455, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789745, Length=110, Percent_Identity=48.1818181818182, Blast_Score=90, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI71993519, Length=92, Percent_Identity=56.5217391304348, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17540882, Length=89, Percent_Identity=53.9325842696629, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17561782, Length=90, Percent_Identity=51.1111111111111, Blast_Score=87, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17561778, Length=96, Percent_Identity=43.75, Blast_Score=74, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17506169, Length=123, Percent_Identity=34.1463414634146, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17506167, Length=123, Percent_Identity=34.1463414634146, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324194, Length=97, Percent_Identity=57.7319587628866, Blast_Score=112, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6320727, Length=92, Percent_Identity=57.6086956521739, Blast_Score=107, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6323566, Length=121, Percent_Identity=42.9752066115703, Blast_Score=95, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6323482, Length=113, Percent_Identity=45.1327433628319, Blast_Score=92, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281363946, Length=89, Percent_Identity=60.6741573033708, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI17352457, Length=89, Percent_Identity=60.6741573033708, Blast_Score=120, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24655568, Length=106, Percent_Identity=53.7735849056604, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24647110, Length=111, Percent_Identity=47.7477477477478, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583150, Length=105, Percent_Identity=46.6666666666667, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI21356629, Length=89, Percent_Identity=58.4269662921348, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 18430; Mature: 18430

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50059 FKBP_PPIASE ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREIWLSFGVIVICGVMLILSAVFNGASQTAIAAELNSTSPVVQIAANPTEELKNMDIDL
CCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCHHHHHCCCCCC
SKATTTESGLQYIDEVVGEGASPMEGEMVTVHYTGKLTNGKVFDSSVKRNEPFSFVIGVG
CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECEECCCEEECCCCCCCCCEEEEEEHH
QVIKGWDEGVITMKPGGKRTLIIPAELGYGSRGAGGVIPPNATLIFDVELLGIR
HHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure
MREIWLSFGVIVICGVMLILSAVFNGASQTAIAAELNSTSPVVQIAANPTEELKNMDIDL
CCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECCCHHHHHCCCCCC
SKATTTESGLQYIDEVVGEGASPMEGEMVTVHYTGKLTNGKVFDSSVKRNEPFSFVIGVG
CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECEECCCEEECCCCCCCCCEEEEEEHH
QVIKGWDEGVITMKPGGKRTLIIPAELGYGSRGAGGVIPPNATLIFDVELLGIR
HHHCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]