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The map label for this gene is sigG [H]

Identifier: 170078575

GI number: 170078575

Start: 2053015

End: 2053671

Strand: Direct

Name: sigG [H]

Synonym: SYNPCC7002_A1970

Alternate gene names: 170078575

Gene position: 2053015-2053671 (Clockwise)

Preceding gene: 170078574

Following gene: 170078576

Centisome position: 68.25

GC content: 51.14

Gene sequence:

>657_bases
ATGAACCGATCCCTTTCTATCCCCATTCCTTCCCAGCAGGGAGTCGTTCCCAAAAGTGGTGTGTCTCCGGAAAAACTCTC
TAACTATGATCTAATTCTCCGTTGCCAGGCGGGTAGTAAGCCTGAGCGGGCTGCTTTCGTGGAATTATTAAAACGTTACC
AGTCCCATGTGGATCGACTCCTCTACCACCTCGCTCCGGATTGGCAGGATCGGTCCGATTTATCCCAGGAAGTTTGGATT
CGGGTTTATCGCAATCTTCAGCGTTTGAATGATCCCCAAAAATTTAAGGGTTGGCTGAGTCGAATTATTACAAACCTCTT
CTATGATGAGCTACGCAAACGTAAACGGGTTCGTCGTCCCCTCTCGTTGGACAATCCGTTTCAGACCCAGGATGGAGAAG
TGGCTTGGGACGTAGCCTCTGATGATCCCAGCCCCGATGATGATCTGGCAACCCAGGAATTTTACGAACATTTACGGGAG
GCGATCGCTGAACTACCAGAAGTCTTTCGCACAACAATCGTGCTGCGGGAAATTGAAGGGCTCGCCTACGAAGAAATTGC
GGAAATCACCGGGGTTTCTCTCGGCACCGTCAAGTCAAGGATCGCCCGGGCCCGGGCCAAGTTACAGGAAATGCTCCAGC
CCTATTTGGCGGACTAG

Upstream 100 bases:

>100_bases
GACTAGGGGCTGACACTTAGAGCTAGGGGCTGGAACTTTTTTCTGGGCCGTAGGGTCTTTACAAGAAGAAGTCCCGTTAT
GAGTTCTTTGTGAAGAGAGC

Downstream 100 bases:

>100_bases
ATAATGAATGAAAGCTTTTCTCAGCGGCAAACCGATGGCGATCGCCGAAGAGGGGGTGACCTAGAAATGAAAAAAAACCA
CACTTCTCACCAACACCACA

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNRSLSIPIPSQQGVVPKSGVSPEKLSNYDLILRCQAGSKPERAAFVELLKRYQSHVDRLLYHLAPDWQDRSDLSQEVWI
RVYRNLQRLNDPQKFKGWLSRIITNLFYDELRKRKRVRRPLSLDNPFQTQDGEVAWDVASDDPSPDDDLATQEFYEHLRE
AIAELPEVFRTTIVLREIEGLAYEEIAEITGVSLGTVKSRIARARAKLQEMLQPYLAD

Sequences:

>Translated_218_residues
MNRSLSIPIPSQQGVVPKSGVSPEKLSNYDLILRCQAGSKPERAAFVELLKRYQSHVDRLLYHLAPDWQDRSDLSQEVWI
RVYRNLQRLNDPQKFKGWLSRIITNLFYDELRKRKRVRRPLSLDNPFQTQDGEVAWDVASDDPSPDDDLATQEFYEHLRE
AIAELPEVFRTTIVLREIEGLAYEEIAEITGVSLGTVKSRIARARAKLQEMLQPYLAD
>Mature_218_residues
MNRSLSIPIPSQQGVVPKSGVSPEKLSNYDLILRCQAGSKPERAAFVELLKRYQSHVDRLLYHLAPDWQDRSDLSQEVWI
RVYRNLQRLNDPQKFKGWLSRIITNLFYDELRKRKRVRRPLSLDNPFQTQDGEVAWDVASDDPSPDDDLATQEFYEHLRE
AIAELPEVFRTTIVLREIEGLAYEEIAEITGVSLGTVKSRIARARAKLQEMLQPYLAD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=193, Percent_Identity=33.6787564766839, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 25251; Mature: 25251

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00018 EF_HAND_1 ; PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSLSIPIPSQQGVVPKSGVSPEKLSNYDLILRCQAGSKPERAAFVELLKRYQSHVDRL
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LYHLAPDWQDRSDLSQEVWIRVYRNLQRLNDPQKFKGWLSRIITNLFYDELRKRKRVRRP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSLDNPFQTQDGEVAWDVASDDPSPDDDLATQEFYEHLREAIAELPEVFRTTIVLREIEG
CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAYEEIAEITGVSLGTVKSRIARARAKLQEMLQPYLAD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRSLSIPIPSQQGVVPKSGVSPEKLSNYDLILRCQAGSKPERAAFVELLKRYQSHVDRL
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LYHLAPDWQDRSDLSQEVWIRVYRNLQRLNDPQKFKGWLSRIITNLFYDELRKRKRVRRP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSLDNPFQTQDGEVAWDVASDDPSPDDDLATQEFYEHLREAIAELPEVFRTTIVLREIEG
CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAYEEIAEITGVSLGTVKSRIARARAKLQEMLQPYLAD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]