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The map label for this gene is degT [H]

Identifier: 170078571

GI number: 170078571

Start: 2049089

End: 2050204

Strand: Reverse

Name: degT [H]

Synonym: SYNPCC7002_A1966

Alternate gene names: 170078571

Gene position: 2050204-2049089 (Counterclockwise)

Preceding gene: 170078579

Following gene: 170078564

Centisome position: 68.16

GC content: 52.6

Gene sequence:

>1116_bases
ATGAGCCAAATTCCTCCTGTTGATCTAGGGCGCCAGTATGCAACCATTGCCGATGAAACCAATGCCGCCGTCTTGGAAGT
GCTCAGTTCCGGTCGCTATATCGGGGGGACAGCAGTAAGCGAATTCGAAAAACATTTTGCCGCTTATCACCAGGTTGACT
CTGCCATCGGCTGCAACTCCGGCACCGATGCCCTTTATCTGGCCCTAAAAGCCCTTGGGATTGGCGTTGGCGATGAAGTG
ATCACCTCTACTTTTACTTTTATCGCCACCGCTGAAGCCATTGCCATGTGTGGCGCAACCCCTGTCTTTGTTGATATTAC
CGCTGCAACCTTCAACCTCGACCTCGATCAACTAGAAGCGGCCATTACTCCCCGTACCAAGGCCGTGATTCCCGTCCATC
TCTTTGGACAGCCTGTGGATATGACCCGTCTTGGGGAAATTGCCCAAAAACATGACCTGTTTATCGTTGAAGATTGTGCC
CAGGCCACGGGAGCAAAATGGGGCGATCGCCAAGTGGGAGCCTGGGGAGATGCTGGCTGTTTTAGCTTTTTTCCGACGAA
AAATTTAGGCGGTTGTGGCGATGGTGGTGCTGTGACGACCAACAATCCCACCCTCCACGAACAGATCAAAATGCTCCGGG
AGCATGGTTCTAAAGTTCGCTATCAACATGAAGTGCTGGGGGTAAATAGTCGGTTAGATGCAGTGCAAGCCACAATTCTC
GCCGTTAAATTGCGTCACCTCGACCTTTGGAATCAACAACGTCAGGCGATCGCCCACCGTTACCATGAATTGCTGGCTGG
GATCGAAGGCATTCAACTCCCCCAAGCAACCCCTGGCGGTACCCATGTCTGGAACCAATACACGATCCTCGTTCAAGCCG
GCGATCGCGATACCCTCCGTAGCCAGCTACAAGCCGAGGGCATCATTGCGATGGTGTACTATCCCAAACCCCTACATCTC
CAGCCCGTGTTTGCAACCTTTGGCTACCAATCCGGAGCATTTCCCATTGCTGAGCAATGTTCTCACCAGGTGCTGTCTTT
GCCTATGTTCCCCGACCTCAGCATCCCAGAACAAGAACAAGTGGCCACAACCCTCAAGCGTTTATTGGCGGCTTAA

Upstream 100 bases:

>100_bases
AATAAATTCACCCATGCGCTTTTTTTTTTCACTCCCATAACCTATAACATTTATATTTACGCTTTTATGCGAATTCCTAC
CCAAAAAATCACCGTCACCC

Downstream 100 bases:

>100_bases
CAACGCGATAATACTGAACAGTCAAAAAATAAAAAAGCCCAGAGAGTCAACGTTGTGACCATCTAAGCCTCCGTACACAT
TTTTAGTTTGTCCGACCAAA

Product: putative pleiotropic regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSQIPPVDLGRQYATIADETNAAVLEVLSSGRYIGGTAVSEFEKHFAAYHQVDSAIGCNSGTDALYLALKALGIGVGDEV
ITSTFTFIATAEAIAMCGATPVFVDITAATFNLDLDQLEAAITPRTKAVIPVHLFGQPVDMTRLGEIAQKHDLFIVEDCA
QATGAKWGDRQVGAWGDAGCFSFFPTKNLGGCGDGGAVTTNNPTLHEQIKMLREHGSKVRYQHEVLGVNSRLDAVQATIL
AVKLRHLDLWNQQRQAIAHRYHELLAGIEGIQLPQATPGGTHVWNQYTILVQAGDRDTLRSQLQAEGIIAMVYYPKPLHL
QPVFATFGYQSGAFPIAEQCSHQVLSLPMFPDLSIPEQEQVATTLKRLLAA

Sequences:

>Translated_371_residues
MSQIPPVDLGRQYATIADETNAAVLEVLSSGRYIGGTAVSEFEKHFAAYHQVDSAIGCNSGTDALYLALKALGIGVGDEV
ITSTFTFIATAEAIAMCGATPVFVDITAATFNLDLDQLEAAITPRTKAVIPVHLFGQPVDMTRLGEIAQKHDLFIVEDCA
QATGAKWGDRQVGAWGDAGCFSFFPTKNLGGCGDGGAVTTNNPTLHEQIKMLREHGSKVRYQHEVLGVNSRLDAVQATIL
AVKLRHLDLWNQQRQAIAHRYHELLAGIEGIQLPQATPGGTHVWNQYTILVQAGDRDTLRSQLQAEGIIAMVYYPKPLHL
QPVFATFGYQSGAFPIAEQCSHQVLSLPMFPDLSIPEQEQVATTLKRLLAA
>Mature_370_residues
SQIPPVDLGRQYATIADETNAAVLEVLSSGRYIGGTAVSEFEKHFAAYHQVDSAIGCNSGTDALYLALKALGIGVGDEVI
TSTFTFIATAEAIAMCGATPVFVDITAATFNLDLDQLEAAITPRTKAVIPVHLFGQPVDMTRLGEIAQKHDLFIVEDCAQ
ATGAKWGDRQVGAWGDAGCFSFFPTKNLGGCGDGGAVTTNNPTLHEQIKMLREHGSKVRYQHEVLGVNSRLDAVQATILA
VKLRHLDLWNQQRQAIAHRYHELLAGIEGIQLPQATPGGTHVWNQYTILVQAGDRDTLRSQLQAEGIIAMVYYPKPLHLQ
PVFATFGYQSGAFPIAEQCSHQVLSLPMFPDLSIPEQEQVATTLKRLLAA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=368, Percent_Identity=34.7826086956522, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI2367285, Length=319, Percent_Identity=35.423197492163, Blast_Score=171, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40151; Mature: 40020

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQIPPVDLGRQYATIADETNAAVLEVLSSGRYIGGTAVSEFEKHFAAYHQVDSAIGCNS
CCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCCCC
GTDALYLALKALGIGVGDEVITSTFTFIATAEAIAMCGATPVFVDITAATFNLDLDQLEA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHH
AITPRTKAVIPVHLFGQPVDMTRLGEIAQKHDLFIVEDCAQATGAKWGDRQVGAWGDAGC
HCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCCCCCCCCCC
FSFFPTKNLGGCGDGGAVTTNNPTLHEQIKMLREHGSKVRYQHEVLGVNSRLDAVQATIL
EECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHH
AVKLRHLDLWNQQRQAIAHRYHELLAGIEGIQLPQATPGGTHVWNQYTILVQAGDRDTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECEEEEEEECCCHHHHH
SQLQAEGIIAMVYYPKPLHLQPVFATFGYQSGAFPIAEQCSHQVLSLPMFPDLSIPEQEQ
HHHHHCCEEEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHCHHHEECCCCCCCCCCCHHH
VATTLKRLLAA
HHHHHHHHHCC
>Mature Secondary Structure 
SQIPPVDLGRQYATIADETNAAVLEVLSSGRYIGGTAVSEFEKHFAAYHQVDSAIGCNS
CCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCCCC
GTDALYLALKALGIGVGDEVITSTFTFIATAEAIAMCGATPVFVDITAATFNLDLDQLEA
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHH
AITPRTKAVIPVHLFGQPVDMTRLGEIAQKHDLFIVEDCAQATGAKWGDRQVGAWGDAGC
HCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCCCCCCCCCC
FSFFPTKNLGGCGDGGAVTTNNPTLHEQIKMLREHGSKVRYQHEVLGVNSRLDAVQATIL
EECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHHHHHHH
AVKLRHLDLWNQQRQAIAHRYHELLAGIEGIQLPQATPGGTHVWNQYTILVQAGDRDTLR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECEEEEEEECCCHHHHH
SQLQAEGIIAMVYYPKPLHLQPVFATFGYQSGAFPIAEQCSHQVLSLPMFPDLSIPEQEQ
HHHHHCCEEEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHCHHHEECCCCCCCCCCCHHH
VATTLKRLLAA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]