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The map label for this gene is apcC [H]

Identifier: 170078533

GI number: 170078533

Start: 2012923

End: 2013126

Strand: Reverse

Name: apcC [H]

Synonym: SYNPCC7002_A1928

Alternate gene names: 170078533

Gene position: 2013126-2012923 (Counterclockwise)

Preceding gene: 170078534

Following gene: 170078532

Centisome position: 66.92

GC content: 47.06

Gene sequence:

>204_bases
ATGCGGATGTTTAAAATTACGGCCTGTGTACCAAGCCAAAGCCGAATTCGGACACAGCGTGAATTACAAAATACATACTT
CACCAAGCTGGTTCCCTACGACAATTGGTTCCGTGAGCAACAACGCATCATGAAGATGGGCGGCAAGATTGTTAAGGTGC
AACTGGCAACTGGTAAGCCCGGCACCAATACTGGTTTGACCTAA

Upstream 100 bases:

>100_bases
TCTGGGTTGCGACTTCCGAACTTTGCTATATCAGCCTTGATAATAAAACTCTTTCAGATAAACGACTGGGCTCAAAAACG
TTTAAGGAGATCATTAAGCT

Downstream 100 bases:

>100_bases
ATACAAATCGTCAAGTGTCCATCTGTTTTTGGGTTTGACTTGGGGAGGTCGATTAACGGCCTCTTATTTTTTTGGCAAAA
TCTGGGGTCATTGGCAAAAA

Product: allophycocyanin-associated phycobilisome core-linker polypeptide

Products: NA

Alternate protein names: LC 7.8 [H]

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MRMFKITACVPSQSRIRTQRELQNTYFTKLVPYDNWFREQQRIMKMGGKIVKVQLATGKPGTNTGLT

Sequences:

>Translated_67_residues
MRMFKITACVPSQSRIRTQRELQNTYFTKLVPYDNWFREQQRIMKMGGKIVKVQLATGKPGTNTGLT
>Mature_67_residues
MRMFKITACVPSQSRIRTQRELQNTYFTKLVPYDNWFREQQRIMKMGGKIVKVQLATGKPGTNTGLT

Specific function: Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with allophycocyanin (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011134
- InterPro:   IPR011064
- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 7794; Mature: 7794

Theoretical pI: Translated: 11.36; Mature: 11.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMFKITACVPSQSRIRTQRELQNTYFTKLVPYDNWFREQQRIMKMGGKIVKVQLATGKP
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
GTNTGLT
CCCCCCC
>Mature Secondary Structure
MRMFKITACVPSQSRIRTQRELQNTYFTKLVPYDNWFREQQRIMKMGGKIVKVQLATGKP
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCC
GTNTGLT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1429645; 8905231 [H]