| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is recG [H]
Identifier: 170078462
GI number: 170078462
Start: 1943024
End: 1945492
Strand: Direct
Name: recG [H]
Synonym: SYNPCC7002_A1856
Alternate gene names: 170078462
Gene position: 1943024-1945492 (Clockwise)
Preceding gene: 170078458
Following gene: 170078464
Centisome position: 64.59
GC content: 52.61
Gene sequence:
>2469_bases ATGAATCAGCCGGATTTTTTGCGATTACAAAAAGCCTTATCCATCGAAGCAGAACGAGGCTTTCAGGATCTCCAGGGCCA TCAGCATCGGTTTAGCGAATTTCTTTGCTTGAGTTTTGGCGCAGTTCCCCCGGCAGGCATTGATCCGGATCAGCGACGCC GGTGGCAGGGATTTGCCCAGAAATTTGCCGATTACCCCGTGGCAACGTTAGGCGATCGCCGTCTTTTGGTAGCCGGGGCG AGACGTTTTTTGCAGCAACTTAAACAAGAGCTAGAACAGCCAAGCCAGATTGCTCCCAAAGCGAAACTGCCCCGCACCCA ATCGGTCTGTGAAAGTAATGTCAAAAGTTCAACCTATGGCAAGAGAATTTCCCTGGATCAACCGTTGATGTATTTGCCAG GCATCGGGCCGAAACGCAGCAACCAATTGGCAAAGCTAGGTTTAGAGACGGTGCGGGATGCACTCTTTTACTACCCCCGA CAGCACATCGACTATGCCAAGCAGGTCAAAATCACTGACCTAGAAGCGGGAGAAACGGTGACCCTGGTGGGCCATGTGGT GCGTTGCAATATTTTTACCAGCCCGAAAAACCAGAAGCTCAGTATTTTCGAACTCTGGTTGCGGGATAGCAGTGGCCGCA TTAAGCTCAGTCGTTTCTATGCGGGCACCCGTTACAGTAATCGGGGTTGGCAAGAAAAAATGAAACGGCAATATCCCCAG GGGGTGGCGATCGCCGCGTCGGGATTGGTGAAAAAAAATAAATATGGCCTCACCCTCGACAACCCAGAAATTGAGGTGCT CGACAGCAGTGGCGCTGATATCAAATCCCTGAAAATTGGCCGAGTATTGCCCGTTTATCCCCTCACGGAAGGGGTCCCCG CCGACCTAATTCGGAAGGTGGTCATTAACTCTCTACCTGCCATTGCGCAGCTTAAGGATGCTTTTCCCACCGCTTTTCGG GAGCAACACGGCTTGATGAAACTCCAAGAGGCGATCGCCAATATTCATTTCCCAGAAAATGCCGAAATTCTCCAACAGGC GCGGCAACGGCTGGTTTTCGATGAATTTTTCTACTTGCAACTGGGTTTCCTCCAACGGCGGCAACAGGAGAAAGCGAGCC AAAAAAGTGCTGTGTTTATTCCCCAGGGGGAACTCATTAAACGTTTTGAAAAACTGCTGCCCTTCCAACTCACCAACGCT CAGCAACGGGTGATCACTGAAATTCTTGCGGATCTGGCCCAGTCAACGCCAATGAATCGCCTTGTCCAGGGGGATGTGGG GGCGGGGAAAACTGTCGTGGCAGTCTTTGCAATCCTGGCCGCGATCCAGTCTGGCTACCAAGCCGCTCTCATGGCGCCCA CCGAAGTCCTTGCCGAGCAGCATTACCGGAAATTGGTGGGCTGGTTTAACCTGCTCCATCTGCCCGTTGAACTGCTCACG GGTTCGACAAAAACGAAAAAACGTCGGGAAATCCATAGTCAATTGCAAACGGGAGAACTCAAAGTTCTCGTCGGCACCCA CGCCCTAATCGAAGATCCGGTACAGTTCCAAAATCTCGGCCTGGTGGTGATCGACGAACAGCACCGCTTTGGTGTCCAAC AGCGGGGGAGACTCCTCGCCAAGGGGAAAGCGCCTCACGTCCTGACCATGACCGCCACCCCGATTCCCCGGAGCTTGGCC CTCACCCTCCATGGGGACTTGGATGTTAGTCAAATTGATGAGCTGCCCCCCGGTCGCCAACCCATCGATACGCGGGTGAT CAAAGGAGGCGATCGCCACAAAGCCTACGAACTGATTAAGCGGGAAGTAGCCCAGGGTCGCCAAGCCTACGTCATTTTTC CGCTAATTGAAGAATCCGAAAAACTCGAAGCTAAGGCCGCCGTCGCCGAACACCAAAGGCTTTCTGAGCAAGTGTTCAAG AGCTTTAACGTGGGTTTACTGCACGGCCGCATGAAATCCGAGGAAAAAGACGCCGCCCTCAATGCTTTCCGCGATAACCA AAACCACATTATTGTTTCCACCACTGTGATCGAAGTGGGGGTTGATGTGCCCAATGCGACGGTAATGCTGATCGAAAATG CCGAACGCTTTGGCCTCTCCCAGTTGCACCAGTTGCGGGGGCGTGTCGGTCGGGGTCAACATCAATCCCACTGTTTGCTC GTCACCAATAGTAAAAATCCTGATTCCCAAACTCGTCTCCGGGTGTTGGAGCAATCCACCGACGGTTTTTTTATCTCAGA AATGGATCTACGCCTGCGGGGGCCGGGGGAAGTGCTGGGGACGAAACAGTCGGGGCTACCAGATTTTGCCCTAGCCAGTC TGACAGAAGATCAAGAGGTTTTACTTATTGCCCGACAAGCGGCAGAACAATTGCTCAAAATTGATCCTCTCCTAGAGCAA TATCCCCTGATGCAACAGGAACTCCAGCGCAAATACCAAAAATTGTTGGGGGCTGACGTCCTGACCTAG
Upstream 100 bases:
>100_bases TTTGCTGTGTGATTACCGTTTCCATTGCGGTACAAGCTTATTAGCAGATAAGGTTTAATGTTGGCAGAGGGGTTAGCCTG CGTTTTTTGTTTATGGTGTT
Downstream 100 bases:
>100_bases GGGGCAACATCGCCGGTTTTTTTCAAACAGAAACTCCCTCCTAAAATTAGGGAAGCGCCCAGAATAATATTTACGGAAAG CTCTTCTTGGAAAAAGACGA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MNQPDFLRLQKALSIEAERGFQDLQGHQHRFSEFLCLSFGAVPPAGIDPDQRRRWQGFAQKFADYPVATLGDRRLLVAGA RRFLQQLKQELEQPSQIAPKAKLPRTQSVCESNVKSSTYGKRISLDQPLMYLPGIGPKRSNQLAKLGLETVRDALFYYPR QHIDYAKQVKITDLEAGETVTLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQ GVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKVVINSLPAIAQLKDAFPTAFR EQHGLMKLQEAIANIHFPENAEILQQARQRLVFDEFFYLQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNA QQRVITEILADLAQSTPMNRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLT GSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRLLAKGKAPHVLTMTATPIPRSLA LTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYELIKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFK SFNVGLLHGRMKSEEKDAALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHCLL VTNSKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLTEDQEVLLIARQAAEQLLKIDPLLEQ YPLMQQELQRKYQKLLGADVLT
Sequences:
>Translated_822_residues MNQPDFLRLQKALSIEAERGFQDLQGHQHRFSEFLCLSFGAVPPAGIDPDQRRRWQGFAQKFADYPVATLGDRRLLVAGA RRFLQQLKQELEQPSQIAPKAKLPRTQSVCESNVKSSTYGKRISLDQPLMYLPGIGPKRSNQLAKLGLETVRDALFYYPR QHIDYAKQVKITDLEAGETVTLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQ GVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKVVINSLPAIAQLKDAFPTAFR EQHGLMKLQEAIANIHFPENAEILQQARQRLVFDEFFYLQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNA QQRVITEILADLAQSTPMNRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLT GSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRLLAKGKAPHVLTMTATPIPRSLA LTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYELIKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFK SFNVGLLHGRMKSEEKDAALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHCLL VTNSKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLTEDQEVLLIARQAAEQLLKIDPLLEQ YPLMQQELQRKYQKLLGADVLT >Mature_822_residues MNQPDFLRLQKALSIEAERGFQDLQGHQHRFSEFLCLSFGAVPPAGIDPDQRRRWQGFAQKFADYPVATLGDRRLLVAGA RRFLQQLKQELEQPSQIAPKAKLPRTQSVCESNVKSSTYGKRISLDQPLMYLPGIGPKRSNQLAKLGLETVRDALFYYPR QHIDYAKQVKITDLEAGETVTLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQ GVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKVVINSLPAIAQLKDAFPTAFR EQHGLMKLQEAIANIHFPENAEILQQARQRLVFDEFFYLQLGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNA QQRVITEILADLAQSTPMNRLVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLT GSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRLLAKGKAPHVLTMTATPIPRSLA LTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYELIKREVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFK SFNVGLLHGRMKSEEKDAALNAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHCLL VTNSKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLTEDQEVLLIARQAAEQLLKIDPLLEQ YPLMQQELQRKYQKLLGADVLT
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=673, Percent_Identity=42.3476968796434, Blast_Score=450, Evalue=1e-127, Organism=Escherichia coli, GI1787357, Length=402, Percent_Identity=36.5671641791045, Blast_Score=262, Evalue=7e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 92376; Mature: 92376
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPDFLRLQKALSIEAERGFQDLQGHQHRFSEFLCLSFGAVPPAGIDPDQRRRWQGFAQ CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH KFADYPVATLGDRRLLVAGARRFLQQLKQELEQPSQIAPKAKLPRTQSVCESNVKSSTYG HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHCCCCCCCC KRISLDQPLMYLPGIGPKRSNQLAKLGLETVRDALFYYPRQHIDYAKQVKITDLEAGETV CEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHEEEEEECCCCCEE TLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQ EEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHCCC GVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKV CEEEEHHCCEECCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCCCCCHHHHHHH VINSLPAIAQLKDAFPTAFREQHGLMKLQEAIANIHFPENAEILQQARQRLVFDEFFYLQ HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNAQQRVITEILADLAQSTPMNR HHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCHHH LVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLT HHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRLLA CCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHCCEEEECCHHHCCHHHCCCEEE KGKAPHVLTMTATPIPRSLALTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYELIK CCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHH REVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFKSFNVGLLHGRMKSEEKDAAL HHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH NAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHCLL HHHCCCCCEEEEEEEEEEEECCCCCCEEEEEECCHHCCHHHHHHHHHHCCCCCCCCEEEE VTNSKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLTEDQEV EECCCCCCHHHHHHHHHCCCCCEEEEECCEEECCCCHHCCCCCCCCCCHHHHHCCCCCHH LLIARQAAEQLLKIDPLLEQYPLMQQELQRKYQKLLGADVLT HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNQPDFLRLQKALSIEAERGFQDLQGHQHRFSEFLCLSFGAVPPAGIDPDQRRRWQGFAQ CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH KFADYPVATLGDRRLLVAGARRFLQQLKQELEQPSQIAPKAKLPRTQSVCESNVKSSTYG HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHCCCCCCCC KRISLDQPLMYLPGIGPKRSNQLAKLGLETVRDALFYYPRQHIDYAKQVKITDLEAGETV CEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHEEEEEECCCCCEE TLVGHVVRCNIFTSPKNQKLSIFELWLRDSSGRIKLSRFYAGTRYSNRGWQEKMKRQYPQ EEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHCCC GVAIAASGLVKKNKYGLTLDNPEIEVLDSSGADIKSLKIGRVLPVYPLTEGVPADLIRKV CEEEEHHCCEECCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCCCCCHHHHHHH VINSLPAIAQLKDAFPTAFREQHGLMKLQEAIANIHFPENAEILQQARQRLVFDEFFYLQ HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LGFLQRRQQEKASQKSAVFIPQGELIKRFEKLLPFQLTNAQQRVITEILADLAQSTPMNR HHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHCCCHHH LVQGDVGAGKTVVAVFAILAAIQSGYQAALMAPTEVLAEQHYRKLVGWFNLLHLPVELLT HHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GSTKTKKRREIHSQLQTGELKVLVGTHALIEDPVQFQNLGLVVIDEQHRFGVQQRGRLLA CCCCHHHHHHHHHHHCCCCEEEEEECHHHHHCCHHHHHCCEEEECCHHHCCHHHCCCEEE KGKAPHVLTMTATPIPRSLALTLHGDLDVSQIDELPPGRQPIDTRVIKGGDRHKAYELIK CCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHH REVAQGRQAYVIFPLIEESEKLEAKAAVAEHQRLSEQVFKSFNVGLLHGRMKSEEKDAAL HHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH NAFRDNQNHIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGQHQSHCLL HHHCCCCCEEEEEEEEEEEECCCCCCEEEEEECCHHCCHHHHHHHHHHCCCCCCCCEEEE VTNSKNPDSQTRLRVLEQSTDGFFISEMDLRLRGPGEVLGTKQSGLPDFALASLTEDQEV EECCCCCCHHHHHHHHHCCCCCEEEEECCEEECCCCHHCCCCCCCCCCHHHHHCCCCCHH LLIARQAAEQLLKIDPLLEQYPLMQQELQRKYQKLLGADVLT HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]