| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078379
Identifier: 170078379
GI number: 170078379
Start: 1858693
End: 1860201
Strand: Direct
Name: 170078379
Synonym: SYNPCC7002_A1772
Alternate gene names: NA
Gene position: 1858693-1860201 (Clockwise)
Preceding gene: 170078378
Following gene: 170078380
Centisome position: 61.79
GC content: 41.35
Gene sequence:
>1509_bases ATGACAGAGATGATTCTCTCTTTATTCAACCCCAATAGTCTTTTGCCCCATCGGGCAGGGGTGGCGGGTTTGGCATTGGC TTTATCTGCCATTGACCCTACTGATGCACCATTGCAATGGGAAGTCACGGATGATGCAGTAAAACTGACTTGGGATTGCA CCGATAAAGAAGCAATTCAATGGTTACTAAAGGAAACTTATCAAATCAAAGATGGTTATCTCAATGTTAAAGCTCTCAAG TTAGATGACCAAAGTCGTTATATTTTTACGGACGGTGTAACGACAACTTTCTTACAACATAGTAAACAAAGAAGTTTAGA TAAACAAACTCAATCCCTCAGTTTTCAAGTGGATGAAGGTCAACCCGAAATTCAAGTTAATCATCGACAATTGTTAGATT GCTATTATACCAGAGACTTCAAAGAAGCTTTTAGCAGTAAGGGTAAATTTCAAAAATCTATTCCTTTGAAAGGTCATCAC TTACCTGGTCTAGTGGAAGATTTTGCTAATGGAGCTTATCAAGAATCTCCAGAAAATTATTTAGCCTTACTTTTTCTTCC TATCGCCTGTCATTATTACCGCTTACCCAACTTTTTATCTGGCTTAGTAATTCTCTCAGTCAGCAACCTAAAAGCATGGG TAAAACGACGAAAAGCCTATGCAGCAAAGACAGTCACTAAACTCAAACCTTATGGAGAATTTCGGGCTAATGGTGCAGGG GAATCTGCTCTAAGATTTCTTTTGCAGGAAAAACTCATTGAGGATGCCAAAGATTTTAAGGTTGATTACTGTGAGGTTTA TCGCCTTGGTAAACAGCCTTGGGACGGCAATCAATCCTATTTAAAACAGGAGGTTTATCGGGTTCATGCTAACGATGAAT TACTTGAGCTTTATCGGGAAGCTTGGGGACTTTTTCCTAGTGTGGTTCGCGAAACTGACAAGGGGGAAACATGGCTCGCC CATTCTAAAGTTTTGCCTTGGATTGCCGATAACTTAATCAAGGGCGATCGCTGGTATCAGGGATTTTTTGAATTCCGTAA AGCTAATGAAATTTATGAACGTACAGGATTAGTCAAGATGACCAAAATTGAAAACGCACTGACATCACAAGAACAAATTT TCTTTGATGCGATTCAGGGAGGGTTTAGTACTTTTTTGCGAGGACAGATTGAACAGGCTACAAAACAAGGCCGCAAGCTT GATTATGCCCAAGTTACCAAAAAGGTCATCTATCGTTTTCAACGTCCGAGCACTCAACAGGAATTTGCTTCGGCGGTCGT GGATTTTCTCAGTCAATTTCGTAGTAGGGCAGCACGAGGTTCGGGTTCCGAGATTTATCTCTGGCTTCACCGCGATCGCC AATGGAAACAAGCCCGTGATTTAGCACTTTTGGCGATCGCCACCTATGAGGGCAAAAACAAACAAGGTGAAACGGAAGTG CCGGAGGAGATTTTGGATCAAACTCTCTCTGAAGCAGAAACCAACGAATCCTTTGAACTCACTCTCTAA
Upstream 100 bases:
>100_bases AGGAAAAACACAAATTTTATCCCATCGCTCCCGCTAATATTTGGGGCTATTCCGAAGAAAAAGGAGCCTTTGATTTGAGA AAACAAGGAGGTGATGTGTC
Downstream 100 bases:
>100_bases ACCATTTATACAATCATCACTGAAAAATTAAGGAAAATAATTATGTCTCAACATCTTTTTGCCACTATCGTCACCCCCAC TGCTGTTGCTGCGAATAACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 502; Mature: 501
Protein sequence:
>502_residues MTEMILSLFNPNSLLPHRAGVAGLALALSAIDPTDAPLQWEVTDDAVKLTWDCTDKEAIQWLLKETYQIKDGYLNVKALK LDDQSRYIFTDGVTTTFLQHSKQRSLDKQTQSLSFQVDEGQPEIQVNHRQLLDCYYTRDFKEAFSSKGKFQKSIPLKGHH LPGLVEDFANGAYQESPENYLALLFLPIACHYYRLPNFLSGLVILSVSNLKAWVKRRKAYAAKTVTKLKPYGEFRANGAG ESALRFLLQEKLIEDAKDFKVDYCEVYRLGKQPWDGNQSYLKQEVYRVHANDELLELYREAWGLFPSVVRETDKGETWLA HSKVLPWIADNLIKGDRWYQGFFEFRKANEIYERTGLVKMTKIENALTSQEQIFFDAIQGGFSTFLRGQIEQATKQGRKL DYAQVTKKVIYRFQRPSTQQEFASAVVDFLSQFRSRAARGSGSEIYLWLHRDRQWKQARDLALLAIATYEGKNKQGETEV PEEILDQTLSEAETNESFELTL
Sequences:
>Translated_502_residues MTEMILSLFNPNSLLPHRAGVAGLALALSAIDPTDAPLQWEVTDDAVKLTWDCTDKEAIQWLLKETYQIKDGYLNVKALK LDDQSRYIFTDGVTTTFLQHSKQRSLDKQTQSLSFQVDEGQPEIQVNHRQLLDCYYTRDFKEAFSSKGKFQKSIPLKGHH LPGLVEDFANGAYQESPENYLALLFLPIACHYYRLPNFLSGLVILSVSNLKAWVKRRKAYAAKTVTKLKPYGEFRANGAG ESALRFLLQEKLIEDAKDFKVDYCEVYRLGKQPWDGNQSYLKQEVYRVHANDELLELYREAWGLFPSVVRETDKGETWLA HSKVLPWIADNLIKGDRWYQGFFEFRKANEIYERTGLVKMTKIENALTSQEQIFFDAIQGGFSTFLRGQIEQATKQGRKL DYAQVTKKVIYRFQRPSTQQEFASAVVDFLSQFRSRAARGSGSEIYLWLHRDRQWKQARDLALLAIATYEGKNKQGETEV PEEILDQTLSEAETNESFELTL >Mature_501_residues TEMILSLFNPNSLLPHRAGVAGLALALSAIDPTDAPLQWEVTDDAVKLTWDCTDKEAIQWLLKETYQIKDGYLNVKALKL DDQSRYIFTDGVTTTFLQHSKQRSLDKQTQSLSFQVDEGQPEIQVNHRQLLDCYYTRDFKEAFSSKGKFQKSIPLKGHHL PGLVEDFANGAYQESPENYLALLFLPIACHYYRLPNFLSGLVILSVSNLKAWVKRRKAYAAKTVTKLKPYGEFRANGAGE SALRFLLQEKLIEDAKDFKVDYCEVYRLGKQPWDGNQSYLKQEVYRVHANDELLELYREAWGLFPSVVRETDKGETWLAH SKVLPWIADNLIKGDRWYQGFFEFRKANEIYERTGLVKMTKIENALTSQEQIFFDAIQGGFSTFLRGQIEQATKQGRKLD YAQVTKKVIYRFQRPSTQQEFASAVVDFLSQFRSRAARGSGSEIYLWLHRDRQWKQARDLALLAIATYEGKNKQGETEVP EEILDQTLSEAETNESFELTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57791; Mature: 57660
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEMILSLFNPNSLLPHRAGVAGLALALSAIDPTDAPLQWEVTDDAVKLTWDCTDKEAIQ CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCHHHHH WLLKETYQIKDGYLNVKALKLDDQSRYIFTDGVTTTFLQHSKQRSLDKQTQSLSFQVDEG HHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCEEEECCC QPEIQVNHRQLLDCYYTRDFKEAFSSKGKFQKSIPLKGHHLPGLVEDFANGAYQESPENY CCCEEECHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCCCHHH LALLFLPIACHYYRLPNFLSGLVILSVSNLKAWVKRRKAYAAKTVTKLKPYGEFRANGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ESALRFLLQEKLIEDAKDFKVDYCEVYRLGKQPWDGNQSYLKQEVYRVHANDELLELYRE HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH AWGLFPSVVRETDKGETWLAHSKVLPWIADNLIKGDRWYQGFFEFRKANEIYERTGLVKM HHCCCHHHHHHCCCCCEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE TKIENALTSQEQIFFDAIQGGFSTFLRGQIEQATKQGRKLDYAQVTKKVIYRFQRPSTQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH EFASAVVDFLSQFRSRAARGSGSEIYLWLHRDRQWKQARDLALLAIATYEGKNKQGETEV HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHCEEEEEEEEECCCCCCCCCCC PEEILDQTLSEAETNESFELTL CHHHHHHHHHHHCCCCCEEEEC >Mature Secondary Structure TEMILSLFNPNSLLPHRAGVAGLALALSAIDPTDAPLQWEVTDDAVKLTWDCTDKEAIQ HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCHHHHH WLLKETYQIKDGYLNVKALKLDDQSRYIFTDGVTTTFLQHSKQRSLDKQTQSLSFQVDEG HHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCEEEECCC QPEIQVNHRQLLDCYYTRDFKEAFSSKGKFQKSIPLKGHHLPGLVEDFANGAYQESPENY CCCEEECHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHCCCCCCCCCHHH LALLFLPIACHYYRLPNFLSGLVILSVSNLKAWVKRRKAYAAKTVTKLKPYGEFRANGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ESALRFLLQEKLIEDAKDFKVDYCEVYRLGKQPWDGNQSYLKQEVYRVHANDELLELYRE HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH AWGLFPSVVRETDKGETWLAHSKVLPWIADNLIKGDRWYQGFFEFRKANEIYERTGLVKM HHCCCHHHHHHCCCCCEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEE TKIENALTSQEQIFFDAIQGGFSTFLRGQIEQATKQGRKLDYAQVTKKVIYRFQRPSTQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH EFASAVVDFLSQFRSRAARGSGSEIYLWLHRDRQWKQARDLALLAIATYEGKNKQGETEV HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHCEEEEEEEEECCCCCCCCCCC PEEILDQTLSEAETNESFELTL CHHHHHHHHHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA