Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

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The map label for this gene is 170078376

Identifier: 170078376

GI number: 170078376

Start: 1854772

End: 1855749

Strand: Direct

Name: 170078376

Synonym: SYNPCC7002_A1769

Alternate gene names: NA

Gene position: 1854772-1855749 (Clockwise)

Preceding gene: 170078375

Following gene: 170078377

Centisome position: 61.66

GC content: 47.85

Gene sequence:

>978_bases
ATGTCCCGCCAATTAGAGCGCCTACTGGAAATTGATCGCCTGATCCGTTCAAGAGAGCGGCAAACACAAGTGAGTCTTGC
TCAGACCTTGGAAGTTTCAGAAAGAACAATTCGTAATGATGTTAATTTTTTGCGAGATCGCTATGATGCCCCGCTGGAGT
ACAACAGAAATCAGGGTTGGTACTATACCGACTCTAATTGGCGATTGCCCAGTACTCCGGTGACCCAAGGGGAACTTTTT
GCCCTCACCCTCGGAGCAAGGATGCTGGAATCTTATTCAGGTTCTATTTATCAAATTCAATTGCGGGAAACTATTGAGCG
AATTGCAAAACGTTTACCAGAACAGAGTGTGATTAATCTGCGACAGTTGGCAGAGGAACGAGTTCACTTCCGCGTTGGGG
GAGAAATTCAACTAAATCCTGAGATTTGGCAAGCTCTCATTGAAGCCAGTGAGCGATCGCAGTCGGTGGTGATGCACTAT
TTTTCGCCGAAGCGTCGGGAAGTGTCAGAGCGTGGTTTTGATCCTTATGTTTTGGACATTTACCGAGCGAGTAATGCCTA
TGTGTGGGGTTATTGCCATTTACGGAACGAGGTTAGGCAATTTCGGATTGACCGGATTCGGAAGCTTGAACCCACAGGGC
AAACCTTTGAGCGGCGGGAATTCGATTTGCAGGAGAAGCTGAAAAGCAGTTTTCAGTACGAGGTGGGTGGCAAAACCTAT
GATGTAGTGATCACCTTTAATGCTCAGACGGCTCCCTATATTACGGAACGGCAATGGCATAGCACCCAAAGGATTGAAAC
CCATGCTGATGGGTCGATTACGCTGCGTTTTACGGCTTCGGGCTTGAACGATATGAAACGCTGGATTCTCGGTTATGGCA
GAGGGGCGATCGCCAAATCTCCTCCGGAACTGGTGAATATGCTGGAACGGGAAACAGCACAGATGGCACGGCAAAACGAA
ACAGGAGAATTTAAGTAG

Upstream 100 bases:

>100_bases
TGATGTGTCTTTTAGTCACGCAATAAATATTTTTTGACCCGGTAAGTCTTTTGACGGGTTTTATCTTTATGATGAAGAGC
GTAGTCGATTTAGTGACACT

Downstream 100 bases:

>100_bases
ATGAATTTTTTGGAAGTGCAGTTTGAGCTGCGGGGTAAAACGCTGCCTGCGGATCATGGTTACAGCCTCTATTCTGGGAT
TAAACAGATTTGGCAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator-Like Protein; Regulatory Protein DeoR; GntR Family Transcriptional Regulator; Transcriptional Regulator Protein-Like Protein; HTH Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Transcriptional Regulator-Like; DeoR Family Regulatory Protein; HTH Domain Family; Transcriptional Regulator Protein

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELF
ALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHY
FSPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY
DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNE
TGEFK

Sequences:

>Translated_325_residues
MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELF
ALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHY
FSPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY
DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNE
TGEFK
>Mature_324_residues
SRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELFA
LTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYF
SPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTYD
VVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNET
GEFK

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38315; Mature: 38184

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00894 HTH_DEOR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCE
YYTDSNWRLPSTPVTQGELFALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINL
EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHH
RQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYFSPKRREVSERGFDPYVLDI
HHHHHHHHEEEECCEEEECHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHCCCCCEEEEE
YRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY
EECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCEEEECCEEE
DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKS
EEEEEECCCCCCCCCCHHHCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC
PPELVNMLERETAQMARQNETGEFK
CHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCE
YYTDSNWRLPSTPVTQGELFALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINL
EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHH
RQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYFSPKRREVSERGFDPYVLDI
HHHHHHHHEEEECCEEEECHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHCCCCCEEEEE
YRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY
EECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCEEEECCEEE
DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKS
EEEEEECCCCCCCCCCHHHCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC
PPELVNMLERETAQMARQNETGEFK
CHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA