| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078349
Identifier: 170078349
GI number: 170078349
Start: 1828469
End: 1829575
Strand: Direct
Name: 170078349
Synonym: SYNPCC7002_A1742
Alternate gene names: NA
Gene position: 1828469-1829575 (Clockwise)
Preceding gene: 170078348
Following gene: 170078350
Centisome position: 60.79
GC content: 48.15
Gene sequence:
>1107_bases ATGATCCGCATTTATACACAACAGACCCAGGGCCAGGCTTGGCTCAGTAACCACCAGCAAAAATCGGTCGTTTTCGCCTG TGGGTTGGGCTTTACAGATACGGCTTTAATTCCGAACATTTCCGCTGCCGGGGCCACCCCAGAGGCGCGCAAATATACAG CGATCGCCGATGCAGAATGTATTTGCCATGGTTTCCGAGAAAAAGCCATTTATCCCTTACCACCGTTAATTGTCGGGGCG TCGCCGGCGATTTTATCCCGTGCTATTTTGTCGCATTATCAAATTCCTGCCTATTTATTTGACACGGGCTTATGGCTTAA ACCAGACAAAAATGCCGTGGATTGTATTGATGTCAGTGGTCAAAAAGCAAGGTGTGTTTCGACAGGAAAGGCCCTCGAAT TTTCAACGGTGAACAAACTTTTCGAGCAGGGTTTAACCTGGGGCGAAACATTAGCAACCCAATATCTCAATCATTTGTTC GTGTTGGGAGAATGTGTGGTCGCAGGCACCACAACGGCATTGGGGGTGTTAACAGGATTAGGTTATGACGCCAACCAGAA AGTGAATAGCAGTTATATCGAATGTAACCACGATTTAAAGTGGCAAATTGTGCAAACAGGTTTAAAAAAAGCGAATTTAA ACCCAAACCCTGATCCTTTTGCAGTAGTGGCGGCAGTGGGCGATCCGATGCAGATTTTCGTCGCTGGCATGGCGATCGCC TTAAGCAGGACTCAAGGAGTTTTGCTCGCAGGGGGAACACAAATGTTAGCGGTGTATGCCTTGATGGAACGGATTTGTAA GTACCATTCGCTTGATTTTGATCCGAAAAATATTGCGGTGGGAACGACACGCTGGGTCGCAGAAGATCCGACGGGGGACA CGGTGGGTTTGGCCGAGTTAATTGGTGAAGTGCCTTTATTAGCGACGCAACTCAGTTTTCAAACTTCTCAATATTCACAA CTGCAATCCTACGAACAGGGTTACGTCAAAGAAGGAGTCGGTGCGGGAGGATTGGCGATCGCCGCCCATTTGGCCTATGG TGCGACCCAGGCAGAATTGTTAGCGATGATTGAACGTACCATTGTCCCCTACCTCGCGGCAAATTAA
Upstream 100 bases:
>100_bases TCACGAATAAGTAGGAAGATTAGGGGGATCATTGCGATTCTCCTAATTTTTTTAGGAGGGAAATATCGTTCTGGCTAGAC TGAGGGCAAGGAAAGGCAAC
Downstream 100 bases:
>100_bases GGGATTAGGGCATTGAGTTTGCCAATTGGGGCGATAAATTTTACGCATTGTCACCGAATGGCGATCGCCCGCCGAAGTTT GCGATACTGGGATTCGAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MIRIYTQQTQGQAWLSNHQQKSVVFACGLGFTDTALIPNISAAGATPEARKYTAIADAECICHGFREKAIYPLPPLIVGA SPAILSRAILSHYQIPAYLFDTGLWLKPDKNAVDCIDVSGQKARCVSTGKALEFSTVNKLFEQGLTWGETLATQYLNHLF VLGECVVAGTTTALGVLTGLGYDANQKVNSSYIECNHDLKWQIVQTGLKKANLNPNPDPFAVVAAVGDPMQIFVAGMAIA LSRTQGVLLAGGTQMLAVYALMERICKYHSLDFDPKNIAVGTTRWVAEDPTGDTVGLAELIGEVPLLATQLSFQTSQYSQ LQSYEQGYVKEGVGAGGLAIAAHLAYGATQAELLAMIERTIVPYLAAN
Sequences:
>Translated_368_residues MIRIYTQQTQGQAWLSNHQQKSVVFACGLGFTDTALIPNISAAGATPEARKYTAIADAECICHGFREKAIYPLPPLIVGA SPAILSRAILSHYQIPAYLFDTGLWLKPDKNAVDCIDVSGQKARCVSTGKALEFSTVNKLFEQGLTWGETLATQYLNHLF VLGECVVAGTTTALGVLTGLGYDANQKVNSSYIECNHDLKWQIVQTGLKKANLNPNPDPFAVVAAVGDPMQIFVAGMAIA LSRTQGVLLAGGTQMLAVYALMERICKYHSLDFDPKNIAVGTTRWVAEDPTGDTVGLAELIGEVPLLATQLSFQTSQYSQ LQSYEQGYVKEGVGAGGLAIAAHLAYGATQAELLAMIERTIVPYLAAN >Mature_368_residues MIRIYTQQTQGQAWLSNHQQKSVVFACGLGFTDTALIPNISAAGATPEARKYTAIADAECICHGFREKAIYPLPPLIVGA SPAILSRAILSHYQIPAYLFDTGLWLKPDKNAVDCIDVSGQKARCVSTGKALEFSTVNKLFEQGLTWGETLATQYLNHLF VLGECVVAGTTTALGVLTGLGYDANQKVNSSYIECNHDLKWQIVQTGLKKANLNPNPDPFAVVAAVGDPMQIFVAGMAIA LSRTQGVLLAGGTQMLAVYALMERICKYHSLDFDPKNIAVGTTRWVAEDPTGDTVGLAELIGEVPLLATQLSFQTSQYSQ LQSYEQGYVKEGVGAGGLAIAAHLAYGATQAELLAMIERTIVPYLAAN
Specific function: Unknown
COG id: COG2038
COG function: function code H; NaMN:DMB phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0284 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1742_SYNP2 (B1XPL7)
Other databases:
- EMBL: CP000951 - RefSeq: YP_001734987.1 - GeneID: 6057435 - GenomeReviews: CP000951_GR - KEGG: syp:SYNPCC7002_A1742 - HOGENOM: HBG497525 - OMA: QMLAVYA - ProtClustDB: PRK04447 - HAMAP: MF_01086 - InterPro: IPR003200 - InterPro: IPR002805 - TIGRFAMs: TIGR00303
Pfam domain/function: PF02277 DBI_PRT; SSF52733 NN:DBI_PRT
EC number: NA
Molecular weight: Translated: 39477; Mature: 39477
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRIYTQQTQGQAWLSNHQQKSVVFACGLGFTDTALIPNISAAGATPEARKYTAIADAEC CEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCEEECCCHHH ICHGFREKAIYPLPPLIVGASPAILSRAILSHYQIPAYLFDTGLWLKPDKNAVDCIDVSG HHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHCCCCHHEECCCCEECCCCCCCEEEECCC QKARCVSTGKALEFSTVNKLFEQGLTWGETLATQYLNHLFVLGECVVAGTTTALGVLTGL CCEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GYDANQKVNSSYIECNHDLKWQIVQTGLKKANLNPNPDPFAVVAAVGDPMQIFVAGMAIA CCCCCCCCCCCEEEECCCCEEHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH LSRTQGVLLAGGTQMLAVYALMERICKYHSLDFDPKNIAVGTTRWVAEDPTGDTVGLAEL HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEECCCCCCCCHHHHH IGEVPLLATQLSFQTSQYSQLQSYEQGYVKEGVGAGGLAIAAHLAYGATQAELLAMIERT HCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH IVPYLAAN HHHHHCCC >Mature Secondary Structure MIRIYTQQTQGQAWLSNHQQKSVVFACGLGFTDTALIPNISAAGATPEARKYTAIADAEC CEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCEEECCCHHH ICHGFREKAIYPLPPLIVGASPAILSRAILSHYQIPAYLFDTGLWLKPDKNAVDCIDVSG HHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHCCCCHHEECCCCEECCCCCCCEEEECCC QKARCVSTGKALEFSTVNKLFEQGLTWGETLATQYLNHLFVLGECVVAGTTTALGVLTGL CCEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GYDANQKVNSSYIECNHDLKWQIVQTGLKKANLNPNPDPFAVVAAVGDPMQIFVAGMAIA CCCCCCCCCCCEEEECCCCEEHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHH LSRTQGVLLAGGTQMLAVYALMERICKYHSLDFDPKNIAVGTTRWVAEDPTGDTVGLAEL HHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEECCCCCCCCHHHHH IGEVPLLATQLSFQTSQYSQLQSYEQGYVKEGVGAGGLAIAAHLAYGATQAELLAMIERT HCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH IVPYLAAN HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA