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The map label for this gene is rhlB [C]

Identifier: 170078314

GI number: 170078314

Start: 1792321

End: 1793817

Strand: Direct

Name: rhlB [C]

Synonym: SYNPCC7002_A1707

Alternate gene names: 170078314

Gene position: 1792321-1793817 (Clockwise)

Preceding gene: 170078313

Following gene: 170078315

Centisome position: 59.58

GC content: 50.77

Gene sequence:

>1497_bases
ATGAGACGACGACCTAAACTCACCTATGACCGGGGCACCCTGATCCTCCATCCCCCACCCCAGGGTAAAACTTGGCTAGA
TTTCGTCACTTGGGATGATCGCATTGAAAAATTTAGGCTCTCAGCCCAGGATTATCGCCCCCTCGTGGAACGGTTACGAA
ACGAAGGGGTAGATTTTATCGATGCGGCCCAACAATTTTCACCCCTAGATTTTGATCCGGCCTTTCCCCTCGAACCCTAT
CCCCACCAACGGGAAGCCTTGTTAGCCTGGAAAAAAGGCGATCGCCAAGGAGTTGTGGTCTTACCCACCGCCGCCGGAAA
AACCTACCTCGCCCAACTGGCCATGGCCAGTACCCCCCGCACAACCTTGGTGGTGGTGCCTACACTCGATTTGATGCACC
AATGGTATGCCCAGCTCAGCACCGCTTTTCCGAACATTGATGTGGGTCTGTTGGGGGGTGGTTCCCGCGATCGCACCCCT
ATCTTGATTGCCACCTACCACAGCGCCGCGATCCACGCAGAAACCCTCGGAAACCAATATGCCCTGATTATTTTCGATGA
ATGTCACCATTTACCCAGTGACTTTTTCCGGGCGATCGCCGAATATTCCATTGCCCCCTATCGTCTCGGTTTAACCGCCA
CCCCCGACCGGAGCGATGGCCGTGAGCAGGATCTAAAACACCTCATTGGGCCTGTCGTATATGACCGTACCCCCAGTTCC
CTTTCCGGGAAAGCCCTAGCCGAGCACCAAATTATTCAACTCAAAATTCCTCTAACCATCACCGAGGCCGACCAATATCA
ACAACTCATCGCCACCCGCAATCAATTTCTCCGGGACAACAATATTTATTTGGGTTCTCTCGAAGGTTGGCAAAATTTTG
TCGCCATCAGTTGTCGTTCCGCTGCGGGTCGCCGCGCCATGTTGGCCCACCGTCAGGCCAAAGATATTGCCGCTGGCACT
GCTGGAAAACTCCGCACCCTTGCCCAGTTAATCCAACGTCACTACCCCGAAAAAATCCTTATTTTTACCAACGACAACGC
CACCGTTTATCGCATCTCCCAGGACTTTTTAATTCCCGCCATTACCCACCAGACCCCAGTCAAAGAACGCCATGAAATCC
TCGAAAAATTTCGTCGCGAAACATACCATATCCTGGTGACTTCCCATGTTTTAAATGAGGGGGTTGATGTTCCCAATGCT
AGAGTGGCAATTATTCTCTCCGGCAGCGGTTCGAGTCGGGAATATGTACAACGTTTAGGGCGAATTTTACGCAAAGGTAA
ATCAGCGACAAAATTGGCTCTTTTGTATGAATTGGTAGCAGAAAATACAAACGAAGAGCAACTTTCCCAACGGCGACGTT
CTCCCCTTAACCCAACAAAGCAACCGCTTACCTCTATAAATTCAAACAGTAATTTACCACGGGTTGCAGAAGCCCAAAGC
CCTTATAAAGCAAACTTCCCAGAGAAATCTGAACAGCCCAAAGACCCACCCATTTGA

Upstream 100 bases:

>100_bases
ACCAGTCGGGGCCATGAATGGACTTGGCGCAATTGGATTGTCTCCCGGGTCAAACGAGAAGGTAATCAGATCCTTTGGCA
ACTCGACCGCATTATCGGTG

Downstream 100 bases:

>100_bases
AGCTTCTCGATAGCTAAAATATGCTTTGATTCTGCCTATAAAGCATCCCTTTTTACGAAGAAAACCCCTCGAAAAAACCG
TTAACCAAACTATAACTTAA

Product: superfamily II DNA/RNA helicase

Products: NA

Alternate protein names: DNA Repair Helicase; Type III Restriction Res Subunit; Helicase Domain-Containing Protein; Helicase Domain Protein; ATP-Dependent DNA Helicase; DNA Repair Helicase RAD; DNA Repair Helicase Rad; Type III Restriction Res Subunit Family; Superfamily II DNA/RNA Helicase; Helicase; DNA Repair Protein; DNA/RNA Helicase; DNA Helicase; DNA Repair Protein Rad; DNA/RNA Helicase Superfamily II; Helicase-Like Protein; Helicase Protein; ATP-Dependent Helicase; DNA Or RNA Helicase Of Superfamily II; DNA Repair Protein RAD; Helicase DNA Repair; Helicase DNA Repair Rad; XPB/RAD25-Related Helicase; DEAD/DEAH Box Helicase-Like; DNA-Helicase; Nucleic Acid ATP-Dependent Helicase; DNA Or RNA Helicase Of Superfamily Protein II; DEAD/DEAH Box Helicase; Helicase ATP-Dependent; DNA Or RNA Helicase; RAD25-Type DNA Repair Helicase; DNA Repair Related Protein; Restriction; Restriction Endonuclease Family Protein; DEAD/DEAH Box Helicase Domain-Containing Protein; RNA Polymerase Sigma

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MRRRPKLTYDRGTLILHPPPQGKTWLDFVTWDDRIEKFRLSAQDYRPLVERLRNEGVDFIDAAQQFSPLDFDPAFPLEPY
PHQREALLAWKKGDRQGVVVLPTAAGKTYLAQLAMASTPRTTLVVVPTLDLMHQWYAQLSTAFPNIDVGLLGGGSRDRTP
ILIATYHSAAIHAETLGNQYALIIFDECHHLPSDFFRAIAEYSIAPYRLGLTATPDRSDGREQDLKHLIGPVVYDRTPSS
LSGKALAEHQIIQLKIPLTITEADQYQQLIATRNQFLRDNNIYLGSLEGWQNFVAISCRSAAGRRAMLAHRQAKDIAAGT
AGKLRTLAQLIQRHYPEKILIFTNDNATVYRISQDFLIPAITHQTPVKERHEILEKFRRETYHILVTSHVLNEGVDVPNA
RVAIILSGSGSSREYVQRLGRILRKGKSATKLALLYELVAENTNEEQLSQRRRSPLNPTKQPLTSINSNSNLPRVAEAQS
PYKANFPEKSEQPKDPPI

Sequences:

>Translated_498_residues
MRRRPKLTYDRGTLILHPPPQGKTWLDFVTWDDRIEKFRLSAQDYRPLVERLRNEGVDFIDAAQQFSPLDFDPAFPLEPY
PHQREALLAWKKGDRQGVVVLPTAAGKTYLAQLAMASTPRTTLVVVPTLDLMHQWYAQLSTAFPNIDVGLLGGGSRDRTP
ILIATYHSAAIHAETLGNQYALIIFDECHHLPSDFFRAIAEYSIAPYRLGLTATPDRSDGREQDLKHLIGPVVYDRTPSS
LSGKALAEHQIIQLKIPLTITEADQYQQLIATRNQFLRDNNIYLGSLEGWQNFVAISCRSAAGRRAMLAHRQAKDIAAGT
AGKLRTLAQLIQRHYPEKILIFTNDNATVYRISQDFLIPAITHQTPVKERHEILEKFRRETYHILVTSHVLNEGVDVPNA
RVAIILSGSGSSREYVQRLGRILRKGKSATKLALLYELVAENTNEEQLSQRRRSPLNPTKQPLTSINSNSNLPRVAEAQS
PYKANFPEKSEQPKDPPI
>Mature_498_residues
MRRRPKLTYDRGTLILHPPPQGKTWLDFVTWDDRIEKFRLSAQDYRPLVERLRNEGVDFIDAAQQFSPLDFDPAFPLEPY
PHQREALLAWKKGDRQGVVVLPTAAGKTYLAQLAMASTPRTTLVVVPTLDLMHQWYAQLSTAFPNIDVGLLGGGSRDRTP
ILIATYHSAAIHAETLGNQYALIIFDECHHLPSDFFRAIAEYSIAPYRLGLTATPDRSDGREQDLKHLIGPVVYDRTPSS
LSGKALAEHQIIQLKIPLTITEADQYQQLIATRNQFLRDNNIYLGSLEGWQNFVAISCRSAAGRRAMLAHRQAKDIAAGT
AGKLRTLAQLIQRHYPEKILIFTNDNATVYRISQDFLIPAITHQTPVKERHEILEKFRRETYHILVTSHVLNEGVDVPNA
RVAIILSGSGSSREYVQRLGRILRKGKSATKLALLYELVAENTNEEQLSQRRRSPLNPTKQPLTSINSNSNLPRVAEAQS
PYKANFPEKSEQPKDPPI

Specific function: Can Carry Out ATP-Dependent Unwinding Of Double Stranded RNA. Has A Role In RNA Decay. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557563, Length=409, Percent_Identity=26.6503667481663, Blast_Score=108, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17556358, Length=434, Percent_Identity=26.4976958525346, Blast_Score=119, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322048, Length=438, Percent_Identity=26.2557077625571, Blast_Score=117, Evalue=3e-27,
Organism=Drosophila melanogaster, GI221331068, Length=411, Percent_Identity=25.7907542579075, Blast_Score=107, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24662247, Length=411, Percent_Identity=25.7907542579075, Blast_Score=107, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.6.1.- [C]

Molecular weight: Translated: 56198; Mature: 56198

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRPKLTYDRGTLILHPPPQGKTWLDFVTWDDRIEKFRLSAQDYRPLVERLRNEGVDFI
CCCCCCCEECCCEEEECCCCCCCEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
DAAQQFSPLDFDPAFPLEPYPHQREALLAWKKGDRQGVVVLPTAAGKTYLAQLAMASTPR
HHHHHCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCC
TTLVVVPTLDLMHQWYAQLSTAFPNIDVGLLGGGSRDRTPILIATYHSAAIHAETLGNQY
EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCHHEEHHHCCCEE
ALIIFDECHHLPSDFFRAIAEYSIAPYRLGLTATPDRSDGREQDLKHLIGPVVYDRTPSS
EEEEEHHHCCCHHHHHHHHHHCCCCCEEECEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
LSGKALAEHQIIQLKIPLTITEADQYQQLIATRNQFLRDNNIYLGSLEGWQNFVAISCRS
CCCCHHCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC
AAGRRAMLAHRQAKDIAAGTAGKLRTLAQLIQRHYPEKILIFTNDNATVYRISQDFLIPA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCEEEE
ITHQTPVKERHEILEKFRRETYHILVTSHVLNEGVDVPNARVAIILSGSGSSREYVQRLG
CCCCCCHHHHHHHHHHHHHHHEEEEEEHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
RILRKGKSATKLALLYELVAENTNEEQLSQRRRSPLNPTKQPLTSINSNSNLPRVAEAQS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHCCC
PYKANFPEKSEQPKDPPI
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRRPKLTYDRGTLILHPPPQGKTWLDFVTWDDRIEKFRLSAQDYRPLVERLRNEGVDFI
CCCCCCCEECCCEEEECCCCCCCEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
DAAQQFSPLDFDPAFPLEPYPHQREALLAWKKGDRQGVVVLPTAAGKTYLAQLAMASTPR
HHHHHCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCC
TTLVVVPTLDLMHQWYAQLSTAFPNIDVGLLGGGSRDRTPILIATYHSAAIHAETLGNQY
EEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCHHEEHHHCCCEE
ALIIFDECHHLPSDFFRAIAEYSIAPYRLGLTATPDRSDGREQDLKHLIGPVVYDRTPSS
EEEEEHHHCCCHHHHHHHHHHCCCCCEEECEEECCCCCCCHHHHHHHHHHHHHCCCCCCC
LSGKALAEHQIIQLKIPLTITEADQYQQLIATRNQFLRDNNIYLGSLEGWQNFVAISCRS
CCCCHHCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC
AAGRRAMLAHRQAKDIAAGTAGKLRTLAQLIQRHYPEKILIFTNDNATVYRISQDFLIPA
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCEEEE
ITHQTPVKERHEILEKFRRETYHILVTSHVLNEGVDVPNARVAIILSGSGSSREYVQRLG
CCCCCCHHHHHHHHHHHHHHHEEEEEEHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
RILRKGKSATKLALLYELVAENTNEEQLSQRRRSPLNPTKQPLTSINSNSNLPRVAEAQS
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHCCC
PYKANFPEKSEQPKDPPI
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA