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The map label for this gene is rnhA [H]

Identifier: 170078313

GI number: 170078313

Start: 1791456

End: 1792337

Strand: Direct

Name: rnhA [H]

Synonym: SYNPCC7002_A1706

Alternate gene names: 170078313

Gene position: 1791456-1792337 (Clockwise)

Preceding gene: 170078312

Following gene: 170078314

Centisome position: 59.56

GC content: 51.25

Gene sequence:

>882_bases
ATGGCACAACAACGCACAATTGACCGCATTTATACCGACGGTGGCTGTATTCGCAATCCCGGCCCCGGTGGTTGGGGAGT
GGTGATCCAGTTCACCGATGGCACCGTTTTGGAAATGGGCGATCGCCAACCCGAAACCACCAATAACCGCATGGAAATGC
AAGCCGCAATCCAGGCCCTCGAATTTGTCCGCGACTGTCCCCAGCCAGAACCAGTGCGCCTTTTTACCGATAGTAAATAT
GTCATCGACGGCATCACTAAATGGATTAAAGGTTGGCAAAAAAAGGGCTGGAAAACCGCCACTGGCAACCCCGTTTTAAA
TCAAGACCTCTGGCAGCAGCTCAATCAACTGAATCAACCGACCATCTCTTGGTGTCACGTCAAAGGCCATAGCGGTGAGG
CGGGGAATGAACGGGCCGATGCGATCGCCAATGGCTTTGCCCGGGGTCAAGCTCCTAACCTACGCAGCCCCAATGCAACC
AAAGATCTACCAAAATCTAGAGGTACGAGCACCAACAGCCCGCCACAATTGACAATAGATTACCCAAAATCTAACGTTGT
AACGCCGAATCCATCCCCCCAAGAGCCCATGACAGATCTCACCAGCCTTGCCCCTGAAGACATTACCCTGCCCTACCATG
AACGAGTTAAGCGCTTAACAGACCTCATCGAAAGTCTCCGTATTGCCGATGAAATTGCGGAAAATGGTTATTTTATTAGT
AGTTCTGAGTTGGCAGATCTAATGGATGTGAATGCCAGTGCCGTCACCAGTCGGGGCCATGAATGGACTTGGCGCAATTG
GATTGTCTCCCGGGTCAAACGAGAAGGTAATCAGATCCTTTGGCAACTCGACCGCATTATCGGTGATGAGACGACGACCT
AA

Upstream 100 bases:

>100_bases
CAATGCCCCGTCCTCACCGCTACCGACAGATCCTTGGGCTGAATAATTAAGCGCGGCCACTGCTCTGTCCCCATCTCCAT
TGTTCTTTTTCTCGCATTTC

Downstream 100 bases:

>100_bases
ACTCACCTATGACCGGGGCACCCTGATCCTCCATCCCCCACCCCAGGGTAAAACTTGGCTAGATTTCGTCACTTGGGATG
ATCGCATTGAAAAATTTAGG

Product: ribonuclease H

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAQQRTIDRIYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQALEFVRDCPQPEPVRLFTDSKY
VIDGITKWIKGWQKKGWKTATGNPVLNQDLWQQLNQLNQPTISWCHVKGHSGEAGNERADAIANGFARGQAPNLRSPNAT
KDLPKSRGTSTNSPPQLTIDYPKSNVVTPNPSPQEPMTDLTSLAPEDITLPYHERVKRLTDLIESLRIADEIAENGYFIS
SSELADLMDVNASAVTSRGHEWTWRNWIVSRVKREGNQILWQLDRIIGDETTT

Sequences:

>Translated_293_residues
MAQQRTIDRIYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQALEFVRDCPQPEPVRLFTDSKY
VIDGITKWIKGWQKKGWKTATGNPVLNQDLWQQLNQLNQPTISWCHVKGHSGEAGNERADAIANGFARGQAPNLRSPNAT
KDLPKSRGTSTNSPPQLTIDYPKSNVVTPNPSPQEPMTDLTSLAPEDITLPYHERVKRLTDLIESLRIADEIAENGYFIS
SSELADLMDVNASAVTSRGHEWTWRNWIVSRVKREGNQILWQLDRIIGDETTT
>Mature_292_residues
AQQRTIDRIYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQALEFVRDCPQPEPVRLFTDSKYV
IDGITKWIKGWQKKGWKTATGNPVLNQDLWQQLNQLNQPTISWCHVKGHSGEAGNERADAIANGFARGQAPNLRSPNATK
DLPKSRGTSTNSPPQLTIDYPKSNVVTPNPSPQEPMTDLTSLAPEDITLPYHERVKRLTDLIESLRIADEIAENGYFISS
SELADLMDVNASAVTSRGHEWTWRNWIVSRVKREGNQILWQLDRIIGDETTT

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

Organism=Homo sapiens, GI21359816, Length=140, Percent_Identity=40.7142857142857, Blast_Score=95, Evalue=6e-20,
Organism=Escherichia coli, GI1786408, Length=139, Percent_Identity=48.9208633093525, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI115532542, Length=138, Percent_Identity=39.8550724637681, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17505482, Length=131, Percent_Identity=35.1145038167939, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17137476, Length=143, Percent_Identity=36.3636363636364, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45552509, Length=143, Percent_Identity=36.3636363636364, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022892
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 32823; Mature: 32692

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQRTIDRIYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQAL
CCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHH
EFVRDCPQPEPVRLFTDSKYVIDGITKWIKGWQKKGWKTATGNPVLNQDLWQQLNQLNQP
HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
TISWCHVKGHSGEAGNERADAIANGFARGQAPNLRSPNATKDLPKSRGTSTNSPPQLTID
CEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
YPKSNVVTPNPSPQEPMTDLTSLAPEDITLPYHERVKRLTDLIESLRIADEIAENGYFIS
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
SSELADLMDVNASAVTSRGHEWTWRNWIVSRVKREGNQILWQLDRIIGDETTT
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AQQRTIDRIYTDGGCIRNPGPGGWGVVIQFTDGTVLEMGDRQPETTNNRMEMQAAIQAL
CCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHH
EFVRDCPQPEPVRLFTDSKYVIDGITKWIKGWQKKGWKTATGNPVLNQDLWQQLNQLNQP
HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCC
TISWCHVKGHSGEAGNERADAIANGFARGQAPNLRSPNATKDLPKSRGTSTNSPPQLTID
CEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
YPKSNVVTPNPSPQEPMTDLTSLAPEDITLPYHERVKRLTDLIESLRIADEIAENGYFIS
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
SSELADLMDVNASAVTSRGHEWTWRNWIVSRVKREGNQILWQLDRIIGDETTT
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA