| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078287
Identifier: 170078287
GI number: 170078287
Start: 1762930
End: 1763481
Strand: Reverse
Name: 170078287
Synonym: SYNPCC7002_A1680
Alternate gene names: NA
Gene position: 1763481-1762930 (Counterclockwise)
Preceding gene: 170078294
Following gene: 170078282
Centisome position: 58.63
GC content: 47.64
Gene sequence:
>552_bases ATGACCGTTGCCACGAGCCGCCCCGTCCTCACCGAAACCCAAAACTTAATCCTCCCTGGTCGCTACAGTTGGGAAGAATT CCAGGCGATCCAAACGGCGATCGGTCAAGCTGCCAGCCTGCGGATCACCTACCTAGACGGAGTAATCGAACTGATGACCC TGGAGGAATACCACAAATCCATCAAAACCATTATCGGCTTTCTTGTAGAACTATATTTGTTCAATCAAGGGATCGAATTT CATCCTGTCGGGAGTGCCACCCGGGTCTCGCGAGAAAAATCCGTTTCCTTTGAACCAGACGAATCCTATTATCTCGGTGA ACAAAAAGAGCATCCCGATCTCGCCATTGAAGTCAATGTCACCAGCGGTAGTCCCCAGAAACTCGAAAAATATCAACGCC TCGGCATTCAGGAAGTTTGGCTGTGGCAAGCGGAAAAATTTTCAATTTATGTCCTCGAAGAAAATACCTACCAAGCTTTA CCCAAAAGTAAATTGTTGCCAGATCTTGACTTTGAACTGTTGGCGCAATGTGTGTTATGCCGTCGCGATTAG
Upstream 100 bases:
>100_bases AAAGATTATCCCCCAGTGTAAGGGATGGGGCGATCGCCTTTTTCCTAATCCGAATTCGGTAGGATAGAACATACCATCAC CCAGCACGAGGGACGATTTT
Downstream 100 bases:
>100_bases AAGCAATCCAGACCTTTACGGCCCAATATCCCCAAAAATAATCAATCCAGATGCCAAATGGGGTTTAAATCGAGTTCAAA GCCTAATAAAACTTGTTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MTVATSRPVLTETQNLILPGRYSWEEFQAIQTAIGQAASLRITYLDGVIELMTLEEYHKSIKTIIGFLVELYLFNQGIEF HPVGSATRVSREKSVSFEPDESYYLGEQKEHPDLAIEVNVTSGSPQKLEKYQRLGIQEVWLWQAEKFSIYVLEENTYQAL PKSKLLPDLDFELLAQCVLCRRD
Sequences:
>Translated_183_residues MTVATSRPVLTETQNLILPGRYSWEEFQAIQTAIGQAASLRITYLDGVIELMTLEEYHKSIKTIIGFLVELYLFNQGIEF HPVGSATRVSREKSVSFEPDESYYLGEQKEHPDLAIEVNVTSGSPQKLEKYQRLGIQEVWLWQAEKFSIYVLEENTYQAL PKSKLLPDLDFELLAQCVLCRRD >Mature_182_residues TVATSRPVLTETQNLILPGRYSWEEFQAIQTAIGQAASLRITYLDGVIELMTLEEYHKSIKTIIGFLVELYLFNQGIEFH PVGSATRVSREKSVSFEPDESYYLGEQKEHPDLAIEVNVTSGSPQKLEKYQRLGIQEVWLWQAEKFSIYVLEENTYQALP KSKLLPDLDFELLAQCVLCRRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21021; Mature: 20890
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVATSRPVLTETQNLILPGRYSWEEFQAIQTAIGQAASLRITYLDGVIELMTLEEYHKS CCCCCCCCCEECCCCEEECCCCCHHHHHHHHHHHCCHHEEEEEEHHHHHHHHHHHHHHHH IKTIIGFLVELYLFNQGIEFHPVGSATRVSREKSVSFEPDESYYLGEQKEHPDLAIEVNV HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEEEE TSGSPQKLEKYQRLGIQEVWLWQAEKFSIYVLEENTYQALPKSKLLPDLDFELLAQCVLC CCCCHHHHHHHHHCCCHHEEEEECCEEEEEEEECCCHHHCCHHHCCCCCCHHHHHHHHHH RRD CCC >Mature Secondary Structure TVATSRPVLTETQNLILPGRYSWEEFQAIQTAIGQAASLRITYLDGVIELMTLEEYHKS CCCCCCCCEECCCCEEECCCCCHHHHHHHHHHHCCHHEEEEEEHHHHHHHHHHHHHHHH IKTIIGFLVELYLFNQGIEFHPVGSATRVSREKSVSFEPDESYYLGEQKEHPDLAIEVNV HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEEEE TSGSPQKLEKYQRLGIQEVWLWQAEKFSIYVLEENTYQALPKSKLLPDLDFELLAQCVLC CCCCHHHHHHHHHCCCHHEEEEECCEEEEEEEECCCHHHCCHHHCCCCCCHHHHHHHHHH RRD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA