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The map label for this gene is apcF

Identifier: 170078239

GI number: 170078239

Start: 1711017

End: 1711526

Strand: Direct

Name: apcF

Synonym: SYNPCC7002_A1631

Alternate gene names: 170078239

Gene position: 1711017-1711526 (Clockwise)

Preceding gene: 170078237

Following gene: 170078241

Centisome position: 56.88

GC content: 51.96

Gene sequence:

>510_bases
ATGCGGGACGCTGTTACAAGTCTGATCAGAAATTACGATACCACCGGGCGTTACTTTGACCGTGATGCCATCGAGAGCCT
CAAAGACTACTTTGCTTCGGGGAATGACCGAATCACCGTTGCGGCGATGATCAATAGTCAATCTGCGGAGATCGTCAAGG
CCGCGGCCAATAGTCTCTTTGAAGCGGTCCCTGAACTGCTCTTAGCTGGGGGCAATGCCTATACGACCCGTCGCTTTTCT
GCTTGCTTGCGGGATATGGACTACTACCTCCGCTATGGCACCTATGCCTTAATTGCTGGGGATATGGACGTTCTCAACGA
GCGGGTCCTACAGGGTTTGAGAGAAACCTATAATTCCCTAGGGGTGCCCATTGCACCGACGGTTCGGGGAATTCAATTCC
TCAAGGATGCGATTAAGGAAATGGCGGCGGCGGCTGGCATTGCGAATACGGCTTTTATTGATGAACCGTTTGACCACATG
ACCCGTGAACTGAGCGAAGTGGATCTCTAA

Upstream 100 bases:

>100_bases
CAGTCATGGGAGTATGTCAATATAAAACGAAGCTTCTCATCCCCCTGGGATGATCCTTTTCTAAACGCGCTTAATAAAAC
TGCTGTTCGGAGAAAATTTA

Downstream 100 bases:

>100_bases
ATTAGTTGACGGCAACTAACTTACACCAATGGTGGGCTGTCACCTCAGTTCCTTGCTCTGACCCTGGTCGGGGCAATTTT
TTTATGGGTCTTTTTCTAAA

Product: allophycocyanin beta-18 subunit

Products: NA

Alternate protein names: Allophycocyanin subunit B18

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRDAVTSLIRNYDTTGRYFDRDAIESLKDYFASGNDRITVAAMINSQSAEIVKAAANSLFEAVPELLLAGGNAYTTRRFS
ACLRDMDYYLRYGTYALIAGDMDVLNERVLQGLRETYNSLGVPIAPTVRGIQFLKDAIKEMAAAAGIANTAFIDEPFDHM
TRELSEVDL

Sequences:

>Translated_169_residues
MRDAVTSLIRNYDTTGRYFDRDAIESLKDYFASGNDRITVAAMINSQSAEIVKAAANSLFEAVPELLLAGGNAYTTRRFS
ACLRDMDYYLRYGTYALIAGDMDVLNERVLQGLRETYNSLGVPIAPTVRGIQFLKDAIKEMAAAAGIANTAFIDEPFDHM
TRELSEVDL
>Mature_169_residues
MRDAVTSLIRNYDTTGRYFDRDAIESLKDYFASGNDRITVAAMINSQSAEIVKAAANSLFEAVPELLLAGGNAYTTRRFS
ACLRDMDYYLRYGTYALIAGDMDVLNERVLQGLRETYNSLGVPIAPTVRGIQFLKDAIKEMAAAAGIANTAFIDEPFDHM
TRELSEVDL

Specific function: A variant beta-allophycocyanin (AP) which forms a complex with ApcE, a phycobilisome terminal emmiter that influences energy transfer to photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): APCF_SYNP2 (O68967)

Other databases:

- EMBL:   AF059338
- EMBL:   CP000951
- RefSeq:   YP_001734877.1
- HSSP:   P72505
- ProteinModelPortal:   O68967
- SMR:   O68967
- GeneID:   6055771
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1631
- HOGENOM:   HBG635139
- OMA:   LRETYNS
- ProtClustDB:   CLSK893744
- GO:   GO:0030089
- GO:   GO:0015979
- GO:   GO:0006810
- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081
- TIGRFAMs:   TIGR01337

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 18724; Mature: 18724

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: BINDING 82-82

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAVTSLIRNYDTTGRYFDRDAIESLKDYFASGNDRITVAAMINSQSAEIVKAAANSLF
CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
EAVPELLLAGGNAYTTRRFSACLRDMDYYLRYGTYALIAGDMDVLNERVLQGLRETYNSL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHHHC
GVPIAPTVRGIQFLKDAIKEMAAAAGIANTAFIDEPFDHMTRELSEVDL
CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDAVTSLIRNYDTTGRYFDRDAIESLKDYFASGNDRITVAAMINSQSAEIVKAAANSLF
CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
EAVPELLLAGGNAYTTRRFSACLRDMDYYLRYGTYALIAGDMDVLNERVLQGLRETYNSL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHHHHHHC
GVPIAPTVRGIQFLKDAIKEMAAAAGIANTAFIDEPFDHMTRELSEVDL
CCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA