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The map label for this gene is rbpA [H]

Identifier: 170078237

GI number: 170078237

Start: 1708616

End: 1708903

Strand: Direct

Name: rbpA [H]

Synonym: SYNPCC7002_A1629

Alternate gene names: 170078237

Gene position: 1708616-1708903 (Clockwise)

Preceding gene: 170078235

Following gene: 170078239

Centisome position: 56.8

GC content: 50.69

Gene sequence:

>288_bases
ATGTCGATTTACATTGGAAATTTGTCCTATCAGGTTACTGATGAGGACCTAAAAGAAACCTTCGCCGAATATGGCAAGGT
AAACCGTGTCCAAGTTCCCACTGACCGGGAAACTGGCAGACCGAGAGGATTCGCCTTTGTGGAAATGTCTAGCGAAGACG
AAGAAAATGCGGCCATTGAAGCCCTAGATGGTGCTGAATGGATGGGTCGTGACCTCAAGGTTAACAAAGCAAAACCCCGT
GAAGACCGTCGTCCGGCTTCCCGTGGGGGTGGCCGTAGCCGCTACTAA

Upstream 100 bases:

>100_bases
TGATCCAGTTAAGTAAGATTGTCTAAAGTTTTCCTGACTGCGTAGCTTTCCGAATCTCTGCCCTCTACGATTCTCCGATT
CGGAAGAATATTCGTTAATT

Downstream 100 bases:

>100_bases
AGCATTTTTCGTAGCATTACTACTCGACACAGCCATTTAGTCTAGCTGTCGTCACAAATAAATTAATTTGTTTCCCACTA
CCATCGGCAGTGGGATTTTT

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSIYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIEALDGAEWMGRDLKVNKAKPR
EDRRPASRGGGRSRY

Sequences:

>Translated_95_residues
MSIYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIEALDGAEWMGRDLKVNKAKPR
EDRRPASRGGGRSRY
>Mature_94_residues
SIYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIEALDGAEWMGRDLKVNKAKPRE
DRRPASRGGGRSRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI303305009, Length=86, Percent_Identity=38.3720930232558, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI5174637, Length=86, Percent_Identity=38.3720930232558, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI45439316, Length=86, Percent_Identity=38.3720930232558, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI4757926, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI35493811, Length=87, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI4502847, Length=89, Percent_Identity=35.9550561797753, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI4758876, Length=98, Percent_Identity=38.7755102040816, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI15055543, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=38.961038961039, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=47.4358974358974, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=51.2820512820513, Blast_Score=86, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=43.9024390243902, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71999554, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71999552, Length=82, Percent_Identity=39.0243902439024, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324324, Length=78, Percent_Identity=42.3076923076923, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=40.7894736842105, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=39.7435897435897, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582417, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550943, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582419, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582423, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582421, Length=87, Percent_Identity=34.4827586206897, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920866, Length=87, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582412, Length=87, Percent_Identity=34.4827586206897, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358099, Length=78, Percent_Identity=39.7435897435897, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10774; Mature: 10643

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIE
CEEEECCEEEEECHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCEEE
ALDGAEWMGRDLKVNKAKPREDRRPASRGGGRSRY
ECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYIGNLSYQVTDEDLKETFAEYGKVNRVQVPTDRETGRPRGFAFVEMSSEDEENAAIE
EEEECCEEEEECHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCEEE
ALDGAEWMGRDLKVNKAKPREDRRPASRGGGRSRY
ECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]