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The map label for this gene is amsH [H]

Identifier: 170078110

GI number: 170078110

Start: 1585174

End: 1586466

Strand: Reverse

Name: amsH [H]

Synonym: SYNPCC7002_A1501

Alternate gene names: 170078110

Gene position: 1586466-1585174 (Counterclockwise)

Preceding gene: 170078130

Following gene: 170078109

Centisome position: 52.74

GC content: 51.66

Gene sequence:

>1293_bases
ATGCAAGCGCAAACTCCACAACGGATCCACCTATCGTCGAGTGCTTTGCCGGCAATGGGCGTTGATCGAAACTACATTCT
CGGTGTGGGCGATCAGTTAGAGGTTGAAGTCTTTAATGTGCCTGAATATAGCGGTAGTCAACGAGTACTGGCCGATGGCT
CCCTTAACCTCCCGGCCATTGGTAAGGTGCCGGTTGCGGGTTTAACCATCGAAGCAGCAGAAACGGCGATCGCCACCCGC
TACCAGTCAGAATTACGCTATCCCAGAATTACCCTTGTCCTGCAGCAACCCCGTTCTTTCCAAGTGACCCTCTCCGGAGA
AGTCAATAGTCCCGGTGCCTATACCCTAGACGGAGGTCAGTTTCCCACCCTGGTGCAAGCCATTCAGGCTTCGGGTGGGC
TCACCTATGCCGCCAATTTACGACAAGTGCAAATTCGTCGCCTCAGCCCATCTGGTGCAAGGCAGACCGTCGCCGTTGAC
CTCTGGGAACTGTTACAAAACGGCGATGCAAGCCAAAACATCGCCCTGCGAGATGGGGATGCGGTTTTTGTACCCGCAGT
AGAAACGGTGAACTTAACCGAGTCGGCTCAACTAGCAGCCTCAAATCTAATTGGCACCCCTGAAACCTTAGACATTGGTG
TTGTTGGCGAAGTATTTCGTCCAGGTATCTATCGATTAACGGGCGGCGAATCCCAAACCAACCCCACCGTCTCCCAAGCC
ATTCGGGAAGCGGGTGGGATCAAGCCCTCCGCTGATATTCGTCAAATTCAAGTGCGACGTCTGACCCGCAGTGGCACCCC
TCAAACCATTGACATTGATTTTTGGGAACTGTTTCAATCAGGAGATTTGACCCAAGACTTAGCCTTACAACAAGGGGATA
CCATTTCTATCGCCACCGCTGCGGCCCCATCCGATGCCGAAGCGGCCCAAATTGTGGCCACTAACTTGTCCCCCGATCAG
ATTCTCGTTAATGTGGTCGGTGAAATCGAGAGTCCTGGTGCTGTTCGCGTTCCTGCAAATACGACATTAAACCAAGCCGT
GCTGGCCGCTGGAGGACTGACAGATCGCGCCCGCAACGATGTGGAATTAATCCGTCTCAATCCCAATGGCACCATTGTCC
AGCAGCAGTTTGAAATTGATTTTTCTCAAAACGTCAATGCCGAATCCAACCCAATTCTTTGGAACAACGATGTCATCATC
GTGGATCGTAATGCAACGGCTAGCTTTACAGATGGACTCTCACGCATTTTAAGTCCACTGCGCAATCTTTTGCCTTTCGG
TTTCTTATTTTAA

Upstream 100 bases:

>100_bases
ATTTTTTATCCTGTTTTGTACGTCAGTCTTCATCCTAATTCCTGGTAGTTTCAGCGCTGCCGCTGCTGCCGACAGGTCTG
ATTTTTCAGAAGATGGGGCG

Downstream 100 bases:

>100_bases
AGATGAATTTTTAAGAATTAAATTTATAAATTAAGCGCGAAACTACCATGGATAAACAAGATACCAATAACGCTGTTCTC
GAATATCAAAATAACGGCCA

Product: polysaccharide export periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MQAQTPQRIHLSSSALPAMGVDRNYILGVGDQLEVEVFNVPEYSGSQRVLADGSLNLPAIGKVPVAGLTIEAAETAIATR
YQSELRYPRITLVLQQPRSFQVTLSGEVNSPGAYTLDGGQFPTLVQAIQASGGLTYAANLRQVQIRRLSPSGARQTVAVD
LWELLQNGDASQNIALRDGDAVFVPAVETVNLTESAQLAASNLIGTPETLDIGVVGEVFRPGIYRLTGGESQTNPTVSQA
IREAGGIKPSADIRQIQVRRLTRSGTPQTIDIDFWELFQSGDLTQDLALQQGDTISIATAAAPSDAEAAQIVATNLSPDQ
ILVNVVGEIESPGAVRVPANTTLNQAVLAAGGLTDRARNDVELIRLNPNGTIVQQQFEIDFSQNVNAESNPILWNNDVII
VDRNATASFTDGLSRILSPLRNLLPFGFLF

Sequences:

>Translated_430_residues
MQAQTPQRIHLSSSALPAMGVDRNYILGVGDQLEVEVFNVPEYSGSQRVLADGSLNLPAIGKVPVAGLTIEAAETAIATR
YQSELRYPRITLVLQQPRSFQVTLSGEVNSPGAYTLDGGQFPTLVQAIQASGGLTYAANLRQVQIRRLSPSGARQTVAVD
LWELLQNGDASQNIALRDGDAVFVPAVETVNLTESAQLAASNLIGTPETLDIGVVGEVFRPGIYRLTGGESQTNPTVSQA
IREAGGIKPSADIRQIQVRRLTRSGTPQTIDIDFWELFQSGDLTQDLALQQGDTISIATAAAPSDAEAAQIVATNLSPDQ
ILVNVVGEIESPGAVRVPANTTLNQAVLAAGGLTDRARNDVELIRLNPNGTIVQQQFEIDFSQNVNAESNPILWNNDVII
VDRNATASFTDGLSRILSPLRNLLPFGFLF
>Mature_430_residues
MQAQTPQRIHLSSSALPAMGVDRNYILGVGDQLEVEVFNVPEYSGSQRVLADGSLNLPAIGKVPVAGLTIEAAETAIATR
YQSELRYPRITLVLQQPRSFQVTLSGEVNSPGAYTLDGGQFPTLVQAIQASGGLTYAANLRQVQIRRLSPSGARQTVAVD
LWELLQNGDASQNIALRDGDAVFVPAVETVNLTESAQLAASNLIGTPETLDIGVVGEVFRPGIYRLTGGESQTNPTVSQA
IREAGGIKPSADIRQIQVRRLTRSGTPQTIDIDFWELFQSGDLTQDLALQQGDTISIATAAAPSDAEAAQIVATNLSPDQ
ILVNVVGEIESPGAVRVPANTTLNQAVLAAGGLTDRARNDVELIRLNPNGTIVQQQFEIDFSQNVNAESNPILWNNDVII
VDRNATASFTDGLSRILSPLRNLLPFGFLF

Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=172, Percent_Identity=33.7209302325581, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788376, Length=172, Percent_Identity=33.7209302325581, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 45973; Mature: 45973

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAQTPQRIHLSSSALPAMGVDRNYILGVGDQLEVEVFNVPEYSGSQRVLADGSLNLPAI
CCCCCCCEEEECCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
GKVPVAGLTIEAAETAIATRYQSELRYPRITLVLQQPRSFQVTLSGEVNSPGAYTLDGGQ
CCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCEEECCCC
FPTLVQAIQASGGLTYAANLRQVQIRRLSPSGARQTVAVDLWELLQNGDASQNIALRDGD
CHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
AVFVPAVETVNLTESAQLAASNLIGTPETLDIGVVGEVFRPGIYRLTGGESQTNPTVSQA
EEEEECEEEECCCCHHHHHHHHCCCCCCEEEEEEEHHHHCCCEEEEECCCCCCCCHHHHH
IREAGGIKPSADIRQIQVRRLTRSGTPQTIDIDFWELFQSGDLTQDLALQQGDTISIATA
HHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCHHHHHCCCCEEEEEEE
AAPSDAEAAQIVATNLSPDQILVNVVGEIESPGAVRVPANTTLNQAVLAAGGLTDRARND
CCCCCCCCEEEEEECCCHHHHHHEEHHCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCC
VELIRLNPNGTIVQQQFEIDFSQNVNAESNPILWNNDVIIVDRNATASFTDGLSRILSPL
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHH
RNLLPFGFLF
HHHCCCCCCC
>Mature Secondary Structure
MQAQTPQRIHLSSSALPAMGVDRNYILGVGDQLEVEVFNVPEYSGSQRVLADGSLNLPAI
CCCCCCCEEEECCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCC
GKVPVAGLTIEAAETAIATRYQSELRYPRITLVLQQPRSFQVTLSGEVNSPGAYTLDGGQ
CCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCCCCEEECCCC
FPTLVQAIQASGGLTYAANLRQVQIRRLSPSGARQTVAVDLWELLQNGDASQNIALRDGD
CHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
AVFVPAVETVNLTESAQLAASNLIGTPETLDIGVVGEVFRPGIYRLTGGESQTNPTVSQA
EEEEECEEEECCCCHHHHHHHHCCCCCCEEEEEEEHHHHCCCEEEEECCCCCCCCHHHHH
IREAGGIKPSADIRQIQVRRLTRSGTPQTIDIDFWELFQSGDLTQDLALQQGDTISIATA
HHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCCHHHHHCCCCEEEEEEE
AAPSDAEAAQIVATNLSPDQILVNVVGEIESPGAVRVPANTTLNQAVLAAGGLTDRARND
CCCCCCCCEEEEEECCCHHHHHHEEHHCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCC
VELIRLNPNGTIVQQQFEIDFSQNVNAESNPILWNNDVIIVDRNATASFTDGLSRILSPL
EEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHH
RNLLPFGFLF
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7596293 [H]